Publications by authors named "Raphael Mourad"

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G-quadruplexes are promoter elements controlling nucleosome exclusion and RNA polymerase II pausing.
Cyril Esnault, Amal Zine El Aabidine, Marie-Cécile Robert, Anne Cucchiarini, Talha Magat, Raphael Mourad

Nat Genet· August 2025

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Semi-supervised learning with pseudo-labeling compares favorably with large language models for regulatory sequence prediction.
Han Phan, Céline Brouard, Raphaël Mourad

Brief Bioinform· September 2024

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Determining Prior Authorization Approval for Lumbar Stenosis Surgery With Machine Learning.
Amaury De Barros, Frederik Abel, Serhii Kolisnyk, Gaspere C Geraci, Fred Hill, Raphael Mourad

Global Spine J· July 2024

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A neural network model for detection and classification of lumbar spinal stenosis on MRI.
Vladislav Tumko, Jack Kim, Natalia Uspenskaia, Shaun Honig, Frederik Abel, Raphaël Mourad

Eur Spine J· March 2024

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An Artificial Intelligence-Based Support Tool for Lumbar Spinal Stenosis Diagnosis from Self-Reported History Questionnaire.
Frederik Abel, Eugene Garcia, Vera Andreeva, Nikolai S Nikolaev, Serhii Kolisnyk, Raphael Mourad

World Neurosurg· January 2024

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Should we really use graph neural networks for transcriptomic prediction?
Céline Brouard, Raphaël Mourad, Nathalie Vialaneix

Brief Bioinform· January 2024

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Author Correction: Chromatin compartmentalization regulates the response to DNA damage.
Coline Arnould, Vincent Rocher, Florian Saur, Aldo S Bader, Fernando Muzzopappa, Raphael Mourad

Nature· December 2023

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Chromatin compartmentalization regulates the response to DNA damage.
Coline Arnould, Vincent Rocher, Florian Saur, Aldo S Bader, Fernando Muzzopappa, Raphael Mourad

Nature· November 2023

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Semi-supervised learning improves regulatory sequence prediction with unlabeled sequences.
Raphaël Mourad

BMC Bioinformatics· May 2023

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Performance of hybrid artificial intelligence in determining candidacy for lumbar stenosis surgery.
Raphael Mourad, Serhii Kolisnyk, Yurii Baiun, Alessandra Falk, Titenkov Yuriy

Eur Spine J· August 2022

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TADreg: a versatile regression framework for TAD identification, differential analysis and rearranged 3D genome prediction.
Raphaël Mourad

BMC Bioinformatics· March 2022

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DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions.
Vincent Rocher, Matthieu Genais, Elissar Nassereddine, Raphael Mourad

PLoS Comput Biol· August 2021

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Loop extrusion as a mechanism for formation of DNA damage repair foci.
Coline Arnould, Vincent Rocher, Anne-Laure Finoux, Thomas Clouaire, Kevin Li, Raphaël Mourad

Nature· February 2021

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Studying 3D genome evolution using genomic sequence.
Raphaël Mourad

Bioinformatics· March 2020

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The 3D genome: From fundamental principles to disease and cancer.
David Umlauf, Raphaël Mourad

Semin Cell Dev Biol· June 2019

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TAD-free analysis of architectural proteins and insulators.
Raphaël Mourad, Olivier Cuvier

Nucleic Acids Res· March 2018

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Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution.
Raphaël Mourad, Krzysztof Ginalski, Gaëlle Legube, Olivier Cuvier

Genome Biol· March 2018

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Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.
Raphaël Mourad, Lang Li, Olivier Cuvier

PLoS Comput Biol· May 2017

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Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation.
Raphaël Mourad, Olivier Cuvier

PLoS Comput Biol· May 2016

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A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK.
Raphaël Mourad, François Chevennet, David T Dunn, Esther Fearnhill, Valerie Delpech

AIDS· September 2015

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Predicting the spatial organization of chromosomes using epigenetic data.
Raphaël Mourad, Olivier Cuvier

Genome Biol· August 2015

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Estrogen induces global reorganization of chromatin structure in human breast cancer cells.
Raphaël Mourad, Pei-Yin Hsu, Liran Juan, Changyu Shen, Prasad Koneru

PLoS One· July 2015

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Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma.
Catherine Igartua, Rachel A Myers, Rasika A Mathias, Maria Pino-Yanes, Celeste Eng, Raphael Mourad

Nat Commun· January 2015

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A dynamic time order network for time-series gene expression data analysis.
Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Huang

BMC Syst Biol· June 2013

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Visualization of pairwise and multilocus linkage disequilibrium structure using latent forests.
Raphaël Mourad, Christine Sinoquet, Christian Dina, Philippe Leray

PLoS One· April 2012

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