Publications by authors named "Remi Monasson"

Claim this Profile
R
Repeats mimic pathogen-associated patterns across a vast evolutionary landscape.
Petr Šulc, Andrea Di Gioacchino, Alexander Solovyov, Siyu Sun, Stephen Martis, Rémi Monasson

Cell Genom· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Designing molecular RNA switches with Restricted Boltzmann machines.
Jorge Fernandez-de-Cossio-Diaz, Pierre Hardouin, Francois-Xavier Lyonnet du Moutier, Andrea Di Gioacchino, Bertrand Marchand, Rémi Monasson

Nat Commun· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A vascular code for speed in the spatial navigation system.
Felipe Cybis Pereira, Sebastian H Castedo, Samuel Le Meur-Diebolt, Nathalie Ialy-Radio, Soumee Bhattacharya, Remi Monasson

Cell Rep· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Constrained Evolutionary Funnels Shape Viral Immune Escape.
Marian Huot, Dianzhuo Wang, Eugene Shakhnovich, Rémi Monasson, Simona Cocco

bioRxiv· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
An independent coding scheme for idiothetic distance in the hippocampus.
Mathilde Nordlund, Nicolas Levernier, Massimiliano Trippa, Romain Bourboulou, Geoffrey Marti, Rémi Monasson

Curr Biol· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A High-Order Cumulant Extension of Quasi-Linkage Equilibrium.
Kai S Shimagaki, Jorge Fernandez-de-Cossio-Diaz, Mauro Pastore, Rémi Monasson, Simona Cocco

ArXiv· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Deciphering the Code of Viral-Host Adaptation Through Maximum-Entropy Nucleotide Bias Models.
Andrea Di Gioacchino, Ivan Lecce, Benjamin D Greenbaum, Rémi Monasson, Simona Cocco

Mol Biol Evol· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
Uncertainties in signal recovery from heterogeneous and convoluted time series with principal component analysis.
Mariia Legenkaia, Laurent Bourdieu, Rémi Monasson

Phys Rev E· April 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Continuous Quasi-Attractors dissolve with too much - or too little - variability.
Francesca Schönsberg, Rémi Monasson, Alessandro Treves

PNAS Nexus· December 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
F
Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information.
Simona Cocco, Lorenzo Posani, Rémi Monasson

Proc Natl Acad Sci U S A· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Information content in continuous attractor neural networks is preserved in the presence of moderate disordered background connectivity.
Tobias Kühn, Rémi Monasson

Phys Rev E· December 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment.
Cyril Malbranke, William Rostain, Florence Depardieu, Simona Cocco, Rémi Monasson

PLoS Comput Biol· November 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data.
Lorenzo Posani, Francesca Rizzato, Rémi Monasson, Simona Cocco

PLoS Comput Biol· October 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity.
Barbara Bravi, Andrea Di Gioacchino, Jorge Fernandez-de-Cossio-Diaz, Aleksandra M Walczak, Thierry Mora, Rémi Monasson

Elife· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Transition paths in Potts-like energy landscapes: General properties and application to protein sequence models.
Eugenio Mauri, Simona Cocco, Rémi Monasson

Phys Rev E· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Machine learning for evolutionary-based and physics-inspired protein design: Current and future synergies.
Cyril Malbranke, David Bikard, Simona Cocco, Rémi Monasson, Jérôme Tubiana

Curr Opin Struct Biol· June 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mutational Paths with Sequence-Based Models of Proteins: From Sampling to Mean-Field Characterization.
Eugenio Mauri, Simona Cocco, Rémi Monasson

Phys Rev Lett· April 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Emergence of time persistence in a data-driven neural network model.
Sebastien Wolf, Guillaume Le Goc, Georges Debrégeas, Simona Cocco, Rémi Monasson

Elife· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.
Andrea Di Gioacchino, Jonah Procyk, Marco Molari, John S Schreck, Yu Zhou, Rémi Monasson

PLoS Comput Biol· September 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A synaptic signal for novelty processing in the hippocampus.
Ruy Gómez-Ocádiz, Massimiliano Trippa, Chun-Lei Zhang, Lorenzo Posani, Simona Cocco, Rémi Monasson

Nat Commun· July 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Neoantigen quality predicts immunoediting in survivors of pancreatic cancer.
Marta Łuksza, Zachary M Sethna, Luis A Rojas, Jayon Lihm, Barbara Bravi, Remi Monasson

Nature· June 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improving sequence-based modeling of protein families using secondary-structure quality assessment.
Cyril Malbranke, David Bikard, Simona Cocco, Rémi Monasson

Bioinformatics· November 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Probing T-cell response by sequence-based probabilistic modeling.
Barbara Bravi, Vinod P Balachandran, Benjamin D Greenbaum, Aleksandra M Walczak, Thierry Mora, Rémi Monasson

PLoS Comput Biol· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
Barriers and dynamical paths in alternating Gibbs sampling of restricted Boltzmann machines.
Clément Roussel, Simona Cocco, Rémi Monasson

Phys Rev E· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Survival probability and size of lineages in antibody affinity maturation.
Marco Molari, Rémi Monasson, Simona Cocco

Phys Rev E· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis