Publications by authors named "Rex T Nelson"

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Soybean genomics research community strategic plan: A vision for 2024-2028.
Robert M Stupar, Anna M Locke, Doug K Allen, Minviluz G Stacey, Jianxin Ma, Rex T Nelson

Plant Genome· December 2024

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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.
Jennifer L Clarke, Laurel D Cooper, Monica F Poelchau, Tanya Z Berardini, Justin Elser, Rex T Nelson

Database (Oxford)· November 2023

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Using Crop Databases to Explore Phenotypes: From QTL to Candidate Genes.
Anne V Brown, David Grant, Rex T Nelson

Plants (Basel)· November 2021

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Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing.
Babu Valliyodan, Anne V Brown, Juexin Wang, Gunvant Patil, Yang Liu, Rex T Nelson

Sci Data· February 2021

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A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database.
Anne V Brown, Shawn I Conners, Wei Huang, Andrew P Wilkey, David Grant, Rex T Nelson

Nucleic Acids Res· January 2021

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Ten quick tips for sharing open genomic data.
Anne V Brown, Jacqueline D Campbell, Teshale Assefa, David Grant, Rex T Nelson

PLoS Comput Biol· December 2018

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An ontology approach to comparative phenomics in plants.
Anika Oellrich, Ramona L Walls, Ethalinda Ks Cannon, Steven B Cannon, Laurel Cooper, Rex T Nelson

Plant Methods· March 2015

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Transcriptome analyses and virus induced gene silencing identify genes in the Rpp4-mediated Asian soybean rust resistance pathway.
Aguida M A P Morales, Jamie A O Rourke, Martijn van de Mortel, Katherine T Scheider, Timothy J Bancroft, Rex T Nelson

Funct Plant Biol· October 2013

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Biphasic gene expression changes elicited by Phakopsora pachyrhizi in soybean correlate with fungal penetration and haustoria formation.
Katherine T Schneider, Martijn van de Mortel, Timothy J Bancroft, Edward Braun, Dan Nettleton, Rex T Nelson

Plant Physiol· September 2011

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Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean.
Yung-Tsi Bolon, William J Haun, Wayne W Xu, David Grant, Minviluz G Stacey, Rex T Nelson

Plant Physiol· May 2011

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Gene expression patterns are correlated with genomic and genic structure in soybean.
Jenna L Woody, Andrew J Severin, Yung-Tsi Bolon, Bindu Joseph, Brian W Diers, Rex T Nelson

Genome· January 2011

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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome.
Andrew J Severin, Jenna L Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W Diers, Rex T Nelson

BMC Plant Biol· August 2010

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Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.
Rex T Nelson, Shulamit Avraham, Randy C Shoemaker, Gregory D May, Doreen Ware

BioData Min· June 2010

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SoyTEdb: a comprehensive database of transposable elements in the soybean genome.
Jianchang Du, David Grant, Zhixi Tian, Rex T Nelson, Liucun Zhu

BMC Genomics· February 2010

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SoyBase, the USDA-ARS soybean genetics and genomics database.
David Grant, Rex T Nelson, Steven B Cannon, Randy C Shoemaker

Nucleic Acids Res· January 2010

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SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.
Damian D G Gessler, Gary S Schiltz, Greg D May, Shulamit Avraham, Christopher D Town, Rex T Nelson

BMC Bioinformatics· September 2009

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Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response.
Jamie A O'Rourke, Rex T Nelson, David Grant, Jeremy Schmutz, Jane Grimwood

BMC Genomics· August 2009

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Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.
Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Rex T Nelson

BMC Genomics· September 2007

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Distinct biphasic mRNA changes in response to Asian soybean rust infection.
Martijn van de Mortel, Justin C Recknor, Michelle A Graham, Dan Nettleton, Jaime D Dittman, Rex T Nelson

Mol Plant Microbe Interact· August 2007

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Identification and analysis of gene families from the duplicated genome of soybean using EST sequences.
Rex T Nelson, Randy Shoemaker

BMC Genomics· August 2006

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ESTminer: a suite of programs for gene and allele identification.
Rex T Nelson, David Grant, Randy C Shoemaker

Bioinformatics· March 2005

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Sequence length required for homologous recombination in Cryptococcus neoformans.
Rex T Nelson, Bryant A Pryor, Jennifer K Lodge

Fungal Genet Biol· February 2003

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Basidioboliasis in anurans in Florida.
Rex T Nelson, Bruce J Cochrane, Pablo R Delis, Diane TeStrake

J Wildl Dis· April 2002

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