Publications by authors named "Richard Baran"

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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes.
Suzanne M Kosina, Annette M Greiner, Rebecca K Lau, Stefan Jenkins, Richard Baran

BMC Microbiol· September 2018

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Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, .
Aifen Zhou, Rebecca Lau, Richard Baran, Jincai Ma, Frederick von Netzer

mBio· November 2017

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Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (DO) Stable Isotope Probing.
Richard Baran, Rebecca Lau, Benjamin P Bowen, Spencer Diamond, Nick Jose

ACS Chem Biol· March 2017

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Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism.
Nicholas J Bouskill, Tana E Wood, Richard Baran, Zaw Ye, Benjamin P Bowen

Front Microbiol· May 2016

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Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition.
Nicholas J Bouskill, Tana E Wood, Richard Baran, Zhao Hao, Zaw Ye

Front Microbiol· March 2016

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Exometabolite niche partitioning among sympatric soil bacteria.
Richard Baran, Eoin L Brodie, Jazmine Mayberry-Lewis, Eric Hummel, Ulisses Nunes Da Rocha

Nat Commun· September 2015

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Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Chew Yee Ngan, Chee-Hong Wong, Cindy Choi, Yuko Yoshinaga, Katherine Louie, Richard Baran

Nat Plants· July 2015

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Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming.
Richard Baran, Trent R Northen

Anal Chem· October 2013

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Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.
Richard Baran, Natalia N Ivanova, Nick Jose, Ferran Garcia-Pichel, Nikos C Kyrpides

Mar Drugs· September 2013

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Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics.
Annika C Mosier, Nicholas B Justice, Benjamin P Bowen, Richard Baran, Brian C Thomas

mBio· March 2013

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Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.
Richard Baran, Benjamin P Bowen, Morgan N Price, Adam P Arkin, Adam M Deutschbauer

ACS Chem Biol· January 2013

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Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.
Richard Baran, Benjamin P Bowen, Trent R Northen

Mol Biosyst· December 2011

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Improved genome annotation through untargeted detection of pathway-specific metabolites.
Benjamin P Bowen, Curt R Fischer, Richard Baran, Jillian F Banfield, Trent Northen

BMC Genomics· June 2011

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Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling.
Richard Baran, Benjamin P Bowen, Nicholas J Bouskill, Eoin L Brodie, Steven M Yannone

Anal Chem· November 2010

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Mass spectrometry based metabolomics and enzymatic assays for functional genomics.
Richard Baran, Wolfgang Reindl, Trent R Northen

Curr Opin Microbiol· October 2009

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Visualization of three-way comparisons of omics data.
Richard Baran, Martin Robert, Makoto Suematsu, Tomoyoshi Soga, Masaru Tomita

BMC Bioinformatics· March 2007

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MathDAMP: a package for differential analysis of metabolite profiles.
Richard Baran, Hayataro Kochi, Natsumi Saito, Makoto Suematsu, Tomoyoshi Soga

BMC Bioinformatics· December 2006

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Metabolomics approach for enzyme discovery.
Natsumi Saito, Martin Robert, Sayaka Kitamura, Richard Baran, Tomoyoshi Soga

J Proteome Res· August 2006

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Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption.
Tomoyoshi Soga, Richard Baran, Makoto Suematsu, Yuki Ueno, Satsuki Ikeda

J Biol Chem· June 2006

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