Publications by authors named "Robert Schnabel"

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Robert D Schnabel

bioRxiv· September 2025

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Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.
Jenna Kalleberg, Jacob Rissman, Robert D Schnabel

Genome Res· August 2025

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Genome-wide association analyses identify single nucleotide polymorphisms associated with in vitro embryo cleavage and blastocyst rates in Holstein bulls.
Kimberly M Davenport, Kelsey Lockhart, Katy Stoecklein, Robert D Schnabel, Thomas E Spencer

J Dairy Sci· July 2025

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Biomarker-based high-throughput sperm phenotyping: Andrology in the age of precision medicine and agriculture.
Filip Tirpak, Lauren E Hamilton, Robert D Schnabel, Peter Sutovsky

Anim Reprod Sci· December 2024

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The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Robert D Schnabel

Nat Genet· August 2024

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Overcoming Limitations to Deep Learning in Domesticated Animals with TrioTrain.
Jenna Kalleberg, Jacob Rissman, Robert D Schnabel

bioRxiv· April 2024

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Genomic loci involved in sensing environmental cues and metabolism affect seasonal coat shedding in Bos taurus and Bos indicus cattle.
Harly J Durbin, Helen Yampara-Iquise, Troy N Rowan, Robert D Schnabel, James E Koltes

G3 (Bethesda)· February 2024

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Uncovering the architecture of selection in two cattle breeds.
Troy N Rowan, Robert D Schnabel, Jared E Decker

Evol Appl· February 2024

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The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.
Timothy P L Smith, Derek M Bickhart, Didier Boichard, Amanda J Chamberlain, Appolinaire Djikeng, Robert D Schnabel

Genome Biol· June 2023

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The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs.
Rongrong Ding, Rodrigo Savegnago, Jinding Liu, Nanye Long, Cheng Tan, Robert Schnabel

Commun Biol· May 2023

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Fourth Report on Chicken Genes and Chromosomes 2022.
Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Robert D Schnabel

Cytogenet Genome Res· January 2023

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Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics.
Saber Qanbari, Robert D Schnabel, Dörte Wittenburg

Anim Genet· August 2022

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Genome-wide association and genotype by environment interactions for growth traits in U.S. Red Angus cattle.
Johanna L Smith, Miranda L Wilson, Sara M Nilson, Troy N Rowan, Robert D Schnabel

BMC Genomics· July 2022

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Exploring genetic variation and population structure in a threatened species, Noturus placidus, with whole-genome sequence data.
Lynsey K Whitacre, Mark L Wildhaber, Gary S Johnson, Harly J Durbin, Troy N Rowan, Robert D Schnabel

G3 (Bethesda)· April 2022

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A Non-Synonymous Point Mutation in a WD-40 Domain Repeat of EML5 Leads to Decreased Bovine Sperm Quality and Fertility.
Eriklis Nogueira, Filip Tirpák, Lauren E Hamilton, Michal Zigo, Karl Kerns, Robert D Schnabel

Front Cell Dev Biol· April 2022

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Taurine and Indicine Haplotype Representation in Advanced Generation Individuals From Three American Breeds.
Tamar E Crum, Robert D Schnabel, Jared E Decker, Jeremy F Taylor

Front Genet· October 2021

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Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle.
Troy N Rowan, Harly J Durbin, Christopher M Seabury, Robert D Schnabel, Jared E Decker

PLoS Genet· July 2021

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Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle.
Camila U Braz, Troy N Rowan, Robert D Schnabel, Jared E Decker

Sci Rep· June 2021

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Introgression, admixture, and selection facilitate genetic adaptation to high-altitude environments in cattle.
Xiuge Wang, Zhihua Ju, Qiang Jiang, Jifeng Zhong, Chengkun Liu, Robert D Schnabel

Genomics· May 2021

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Spliced genes in muscle from Nelore Cattle and their association with carcass and meat quality.
Danielly B S Silva, Larissa F S Fonseca, Daniel G Pinheiro, Ana F B Magalhães, Maria M M Muniz, Robert D Schnabel

Sci Rep· September 2020

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Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.
Mariângela B C Maldonado, Nelson B de Rezende Neto, Sheila T Nagamatsu, Marcelo F Carazzolle, Jesse L Hoff, Robert D Schnabel

PLoS One· March 2020

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De novo assembly of the cattle reference genome with single-molecule sequencing.
Benjamin D Rosen, Derek M Bickhart, Robert D Schnabel, Sergey Koren, Christine G Elsik

Gigascience· March 2020

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Neuronal ceroid lipofuscinosis in a German Shorthaired Pointer associated with a previously reported nonsense variant.
Juyuan Guo, Gary S Johnson, James Cook, Olivia K Harris, Tendai Mhlanga-Mutangadura, Robert D Schnabel

Mol Genet Metab Rep· December 2019

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Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle.
Johanna L Smith, Miranda L Wilson, Sara M Nilson, Troy N Rowan, David L Oldeschulte, Robert D Schnabel

BMC Genomics· December 2019

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A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle.
Troy N Rowan, Jesse L Hoff, Tamar E Crum, Jeremy F Taylor, Robert D Schnabel

Genet Sel Evol· December 2019

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