Publications by authors named "Rodolfo Ciuffa"

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Depletion-dependent activity-based protein profiling using SWATH/DIA-MS detects serine hydrolase lipid remodeling in lung adenocarcinoma progression.
Tatjana Sajic, Matej Vizovišek, Stephan Arni, Rodolfo Ciuffa, Martin Mehnert

Nat Commun· May 2025

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DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes.
Fabian Frommelt, Andrea Fossati, Federico Uliana, Fabian Wendt, Peng Xue, Rodolfo Ciuffa

Nat Methods· April 2024

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Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells.
Fabian Offensperger, Gary Tin, Miquel Duran-Frigola, Elisa Hahn, Sarah Dobner, Rodolfo Ciuffa

Science· April 2024

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Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.
Federico Uliana, Rodolfo Ciuffa, Ranjan Mishra, Andrea Fossati, Fabian Frommelt

Mol Syst Biol· April 2023

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Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.
Rodolfo Ciuffa, Federico Uliana, Jonathan Mannion, Martin Mehnert, Tencho Tenev

Proc Natl Acad Sci U S A· October 2022

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PCfun: a hybrid computational framework for systematic characterization of protein complex function.
Varun S Sharma, Andrea Fossati, Rodolfo Ciuffa, Marija Buljan, Evan G Williams

Brief Bioinform· July 2022

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Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen.
Federico Uliana, Matej Vizovišek, Laura Acquasaliente, Rodolfo Ciuffa, Andrea Fossati

Nat Commun· March 2021

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Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases.
Marija Buljan, Rodolfo Ciuffa, Audrey van Drogen, Anton Vichalkovski, Martin Mehnert

Mol Cell· August 2020

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Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes.
Martin Mehnert, Rodolfo Ciuffa, Fabian Frommelt, Federico Uliana, Audrey van Drogen

Nat Commun· July 2020

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A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model.
Tatjana Sajic, Rodolfo Ciuffa, Vera Lemos, Pan Xu, Valentina Leone

Sci Rep· May 2019

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Contribution of Mass Spectrometry-Based Proteomics to the Understanding of TNF-α Signaling.
Rodolfo Ciuffa, Etienne Caron, Alexander Leitner, Federico Uliana, Matthias Gstaiger

J Proteome Res· January 2017

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The selective autophagy receptor p62 forms a flexible filamentous helical scaffold.
Rodolfo Ciuffa, Trond Lamark, Abul K Tarafder, Audrey Guesdon, Sofia Rybina

Cell Rep· May 2015

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SPRING - an image processing package for single-particle based helical reconstruction from electron cryomicrographs.
Ambroise Desfosses, Rodolfo Ciuffa, Irina Gutsche, Carsten Sachse

J Struct Biol· January 2014

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Molecular basis for coupling the plasma membrane to the actin cytoskeleton during clathrin-mediated endocytosis.
Michal Skruzny, Thorsten Brach, Rodolfo Ciuffa, Sofia Rybina, Malte Wachsmuth

Proc Natl Acad Sci U S A· September 2012

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