Publications by authors named "Rodolfo Salido"

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Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes.
Caitriona Brennan, Justin P Shaffer, Pedro Belda-Ferre, Ipsita Mohanty, Yuhan Weng, Rodolfo A Salido

Microbiol Spectr· November 2025

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Calculating fast differential genome coverages among metagenomic sources using micov.
Yuhan Weng, Caitlin Guccione, Daniel McDonald, Renee Oles, Suzanne Devkota, Rodolfo A Salido

Commun Biol· November 2025

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Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics.
Rob Knight, M Omar Din, Rodolfo Salido, Gillian Wright, Caitriona Brennan

Res Sq· September 2025

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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.
Cameron Martino, Benjamin P Kellman, Daniel R Sandoval, Thomas Mandel Clausen, Robert Cooper, Rodolfo A Salido

mBio· April 2025

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The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns.
Rodolfo A Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa

Cell· April 2025

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Correction for Brennan et al., "Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution".
Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart

mSystems· January 2025

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Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.
Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Rodolfo A Salido

mSystems· October 2024

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Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-A Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort.
Kari Koponen, Oleg Kambur, Bijoy Joseph, Matti O Ruuskanen, Pekka Jousilahti, Rodolfo Salido

Arterioscler Thromb Vasc Biol· February 2024

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Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.
Nathaniel L Matteson, Gabriel W Hassler, Ezra Kurzban, Madison A Schwab, Sarah A Perkins, Rodolfo A Salido

Cell· December 2023

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Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution.
Caitriona Brennan, Rodolfo A Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart

mSystems· August 2023

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Gut microbiome and atrial fibrillation-results from a large population-based study.
Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Rodolfo A Salido

EBioMedicine· May 2023

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Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools.
Rebecca Fielding-Miller, Smruthi Karthikeyan, Tommi Gaines, Richard S Garfein, Rodolfo A Salido

Lancet Reg Health Am· March 2023

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Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project.
Rebecca Fielding-Miller, Smruthi Karthikeyan, Tommi Gaines, Richard S Garfein, Rodolfo A Salido

medRxiv· January 2023

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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido

Nat Microbiol· December 2022

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Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Rodolfo A Salido

Nature· September 2022

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Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.
Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai

mSystems· August 2022

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Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.
Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin

mSystems· August 2022

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SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp.
Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai

mSystems· June 2022

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A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.
Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich

Biotechniques· June 2022

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The molecular impact of life in an indoor environment.
Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod

Sci Adv· June 2022

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Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.
Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Rodolfo A Salido

medRxiv· April 2022

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Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs.
Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei

mSystems· December 2021

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SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with sp.
Victor J Cantú, Rodolfo A Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai

medRxiv· December 2021

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Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence.
Rodolfo A Salido, Victor J Cantú, Alex E Clark, Sandra L Leibel, Anahid Foroughishafiei

bioRxiv· July 2021

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SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.
Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Rodolfo A Salido

Microbiome· June 2021

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