Publications by authors named "Roger Alexander"

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The EV antibody database: An interactive database of curated antibodies for extracellular vesicle and nanoparticle research.
Amber Morey, Martin Ng, Michail Spanos, Piyan Zhang, Tuoye Xu, Roger P Alexander

Extracell Vesicle· June 2024

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exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers.
Emily L LaPlante, Alessandra Stürchler, Robert Fullem, David Chen, Anne C Starner, Roger P Alexander

Cell Genom· May 2023

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Phase 2 of extracellular RNA communication consortium charts next-generation approaches for extracellular RNA research.
Bogdan Mateescu, Jennifer C Jones, Roger P Alexander, Eric Alsop, Ji Yeong An, Alexander K Tucker-Schwartz

iScience· August 2022

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Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.
Roger P Alexander, Robert R Kitchen, Juan Pablo Tosar, Matthew Roth, Pieter Mestdagh

Front Genet· January 2022

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Small RNA Sequencing across Diverse Biofluids Identifies Optimal Methods for exRNA Isolation.
Srimeenakshi Srinivasan, Ashish Yeri, Pike See Cheah, Allen Chung, Kirsty Danielson, Roger P Alexander

Cell· April 2019

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exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.
Oscar D Murillo, William Thistlethwaite, Joel Rozowsky, Sai Lakshmi Subramanian, Rocco Lucero, Roger P Alexander, Alexander R Pico

Cell· April 2019

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Overview of Protocols for Studying Extracellular RNA and Extracellular Vesicles.
Julia Small, Sabrina Roy, Roger Alexander, Leonora Balaj

Methods Mol Biol· January 2019

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Extending gene ontology in the context of extracellular RNA and vesicle communication.
Kei-Hoi Cheung, Shivakumar Keerthikumar, Paola Roncaglia, Sai Lakshmi Subramanian, Matthew E Roth, Roger Alexander

J Biomed Semantics· October 2016

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Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.
Sai Lakshmi Subramanian, Robert R Kitchen, Roger Alexander, Bob S Carter, Kei-Hoi Cheung, Alexander Pico

J Extracell Vesicles· August 2015

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Comparative analysis of the transcriptome across distant species.
Mark B Gerstein, Joel Rozowsky, Koon-Kiu Yan, Daifeng Wang, Chao Cheng, Roger P Alexander

Nature· August 2014

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Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis.
Feng Qian, Lisa Chung, Wei Zheng, Vincent Bruno, Roger P Alexander

Viruses· July 2013

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Architecture of the human regulatory network derived from ENCODE data.
Mark B Gerstein, Anshul Kundaje, Manoj Hariharan, Stephen G Landt, Koon-Kiu Yan, Roger Alexander

Nature· September 2012

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Understanding transcriptional regulation by integrative analysis of transcription factor binding data.
Chao Cheng, Roger Alexander, Renqiang Min, Jing Leng, Kevin Y Yip

Genome Res· September 2012

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A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.
Chao Cheng, Koon-Kiu Yan, Kevin Y Yip, Joel Rozowsky, Roger Alexander

Genome Biol· February 2012

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Summary of the new 2010 American Heart Association Guidelines for Basic Life Support (CPR).
Roger E Alexander

Tex Dent J· March 2011

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Mark B Gerstein, Zhi John Lu, Eric L Van Nostrand, Chao Cheng, Bradley I Arshinoff, Roger P Alexander

Science· December 2010

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CheV: CheW-like coupling proteins at the core of the chemotaxis signaling network.
Roger P Alexander, Andrew C Lowenthal, Rasika M Harshey, Karen M Ottemann

Trends Microbiol· November 2010

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Annotating non-coding regions of the genome.
Roger P Alexander, Gang Fang, Joel Rozowsky, Michael Snyder, Mark B Gerstein

Nat Rev Genet· August 2010

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Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.
Koon-Kiu Yan, Gang Fang, Nitin Bhardwaj, Roger P Alexander, Mark Gerstein

Proc Natl Acad Sci U S A· May 2010

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Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data.
Kevin Y Yip, Roger P Alexander, Koon-Kiu Yan, Mark Gerstein

PLoS One· January 2010

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Is your office prepared for an accidental needlestick or other unexpected exposure incident?
Roger E Alexander, Sharon Limes

Tex Dent J· January 2010

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Understanding modularity in molecular networks requires dynamics.
Roger P Alexander, Philip M Kim, Thierry Emonet, Mark B Gerstein

Sci Signal· July 2009

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Long-acting erythromycins: assessing their role in treating outpatient odontogenic infections.
Roger E Alexander, David M Grogan

Tex Dent J· April 2009

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RodZ, a component of the bacterial core morphogenic apparatus.
S Anisah Alyahya, Roger Alexander, Teresa Costa, Adriano O Henriques, Thierry Emonet

Proc Natl Acad Sci U S A· January 2009

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Management of dental patients with obstructive lung diseases.
Roger E Alexander, David M Grogan

Tex Dent J· March 2008

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