Publications by authors named "Ross Carlson"

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Cellular Economics of Exchanged Metabolites Alter Ratios of Microbial Trading Partners in a Predictable Manner.
Martina Du, Jeremy M Chaćon, Heejoon Park, Campbell Putnam, Tomáš Gedeon, Ross P Carlson

ACS Synth Biol· November 2025

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Chondrocytes Embedded in Agarose Generate Distinct Metabolic Heat Profiles Based on Media Carbon Sources.
Erik Myers, Priyanka Brahmachary, Sarah Mensah, Campbell Putnam, Ross P Carlson

Ann Biomed Eng· September 2025

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Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition.
Ave T Bisesi, Ross P Carlson, Lachlan Cotner, William R Harcombe

mSystems· September 2025

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Cell Geometry and Membrane Protein Crowding Constrain Growth Rate, Overflow Metabolism, Respiration, and Maintenance Energy.
Ross P Carlson, Tomáš Gedeon, Mauricio Garcia Benitez, William R Harcombe, Radhakrishnan Mahadevan

bioRxiv· August 2025

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Author Correction: Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
Nancy O Nou, Jonathan K Covington, Dengxun Lai, Xavier Mayali, Cale O Seymour, Ross P Carlson

Nat Commun· April 2025

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Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
Nancy O Nou, Jonathan K Covington, Dengxun Lai, Xavier Mayali, Cale O Seymour, Ross P Carlson

Nat Commun· November 2024

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Logic programming-based Minimal Cut Sets reveal consortium-level therapeutic targets for chronic wound infections.
Maxime Mahout, Ross P Carlson, Laurent Simon, Sabine Peres

NPJ Syst Biol Appl· April 2024

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Simulating compatible solute biosynthesis using a metabolic flux model of the biomining acidophile, Acidithiobacillus ferrooxidans ATCC 23270.
Himel Nahreen Khaleque, Hadi Nazem-Bokaee, Yosephine Gumulya, Ross P Carlson, Anna H Kaksonen

Res Microbiol· January 2024

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Environment Constrains Fitness Advantages of Division of Labor in Microbial Consortia Engineered for Metabolite Push or Pull Interactions.
Ashley E Beck, Kathryn Pintar, Diana Schepens, Ashley Schrammeck, Timothy Johnson, Ross P Carlson

mSystems· August 2022

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Spatially resolved analysis of Pseudomonas aeruginosa biofilm proteomes measured by laser ablation sample transfer.
Aruni Chathurya Pulukkody, Yeni P Yung, Fabrizio Donnarumma, Kermit K Murray, Ross P Carlson

PLoS One· November 2021

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In Silico Analysis of Functionalized Hydrocarbon Production Using Ehrlich Pathway and Fatty Acid Derivatives in an Endophytic Fungus.
Kristopher A Hunt, Natasha D Mallette, Brent M Peyton, Ross P Carlson

J Fungi (Basel)· May 2021

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Design for Systems-Based Metabolic Engineering for the Bioconversion of Valuable Compounds From Industrial By-Products.
Albert Enrique Tafur Rangel, Wendy Ríos, Daisy Mejía, Carmen Ojeda, Ross Carlson

Front Genet· March 2021

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Pseudomonas aeruginosa reverse diauxie is a multidimensional, optimized, resource utilization strategy.
S Lee McGill, Yeni Yung, Kristopher A Hunt, Michael A Henson, Luke Hanley, Ross P Carlson

Sci Rep· January 2021

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Limitation by a shared mutualist promotes coexistence of multiple competing partners.
Sarah P Hammarlund, Tomáš Gedeon, Ross P Carlson, William R Harcombe

Nat Commun· January 2021

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Artificial consortium demonstrates emergent properties of enhanced cellulosic-sugar degradation and biofuel synthesis.
Heejoon Park, Ayushi Patel, Kristopher A Hunt, Michael A Henson, Ross P Carlson

NPJ Biofilms Microbiomes· December 2020

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Interspecies interactions can enhance Pseudomonas aeruginosa tolerance to surfaces functionalized with silver nanoparticles.
Markéta Hůlková, Jana Soukupová, Ross P Carlson, Blahoslav Maršálek

Colloids Surf B Biointerfaces· August 2020

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Reverse diauxie phenotype in biofilm revealed by exometabolomics and label-free proteomics.
Yeni P Yung, S Lee McGill, Hui Chen, Heejoon Park, Ross P Carlson

NPJ Biofilms Microbiomes· June 2020

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Pseudomonad reverse carbon catabolite repression, interspecies metabolite exchange, and consortial division of labor.
Heejoon Park, S Lee McGill, Adrienne D Arnold, Ross P Carlson

Cell Mol Life Sci· February 2020

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Integrated thermodynamic analysis of electron bifurcating [FeFe]-hydrogenase to inform anaerobic metabolism and H production.
Zackary J Jay, Kristopher A Hunt, Katherine J Chou, Gerrit J Schut, Pin-Ching Maness, Ross P Carlson

Biochim Biophys Acta Bioenerg· January 2020

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In Silico Metabolic Design of Two-Strain Biofilm Systems Predicts Enhanced Biomass Production and Biochemical Synthesis.
Ayushi Patel, Ross P Carlson, Michael A Henson

Biotechnol J· July 2019

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Role of resource allocation and transport in emergence of cross-feeding in microbial consortia.
Diana Schepens, Ross P Carlson, Jeff Heys, Ashley E Beck, Tomáš Gedeon

J Theor Biol· April 2019

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Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community.
Kristopher A Hunt, Ryan M Jennings, William P Inskeep, Ross P Carlson

PLoS Comput Biol· September 2018

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Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia.
Ross P Carlson, Ashley E Beck, Poonam Phalak, Matthew W Fields, Tomas Gedeon

Biochem Soc Trans· April 2018

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In a quest for engineering acidophiles for biomining applications: challenges and opportunities.
Yosephine Gumulya, Naomi J Boxall, Himel N Khaleque, Ville Santala, Ross P Carlson

Genes (Basel)· February 2018

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The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.
Rhesa N Ledbetter, Amaya M Garcia Costas, Carolyn E Lubner, David W Mulder, Monika Tokmina-Lukaszewska, Ross P Carlson

Biochemistry· August 2017

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