Publications by authors named "Ruining Deng"

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Quantitative benchmarking of anomaly detection methods in digital pathology images.
Can Cui, Xindong Zheng, Ruining Deng, Quan Liu, Tianyuan Yao

Mach Learn Health· December 2025

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Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology.
Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao

J Med Imaging (Bellingham)· November 2025

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Img2ST-Net: efficient high-resolution spatial omics prediction from whole-slide histology images via fully convolutional image-to-image learning.
Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong

J Med Imaging (Bellingham)· November 2025

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Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment.
Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao

Commun Med (Lond)· November 2025

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Evaluating New AI Cell Foundation Models on Challenging Kidney Pathology Cases Unaddressed by Previous Foundation Models.
Runchen Wang, Junlin Guo, Siqi Lu, Ruining Deng, Zhengyi Lu

ArXiv· October 2025

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Computer Vision Methods for Spatial Transcriptomics: A Survey.
Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu

bioRxiv· October 2025

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Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model.
Xueyuan Li, Can Cui, Ruining Deng, Yucheng Tang, Quan Liu

J Med Imaging (Bellingham)· September 2025

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stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration.
Yu Wang, Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu

Brief Bioinform· August 2025

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ZeroReg3D: a zero-shot registration pipeline for 3D consecutive histopathology image reconstruction.
Juming Xiong, Ruining Deng, Jialin Yue, Siqi Lu, Junlin Guo

J Med Imaging (Bellingham)· July 2025

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GloFinder: AI-empowered QuPath plugin for WSI-level glomerular detection, visualization, and curation.
Jialin Yue, Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo

J Pathol Inform· April 2025

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Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging.
Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W Remedios

IS&T Int Symp Electron Imaging· February 2025

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Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results.
Jialin Yue, Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong

Proc SPIE Int Soc Opt Eng· February 2025

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Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology.
Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao

Proc SPIE Int Soc Opt Eng· February 2025

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Dataset Distillation in Medical Imaging: A Feasibility Study.
Muyang Li, Can Cui, Quan Liu, Ruining Deng, Tianyuan Yao

Proc SPIE Int Soc Opt Eng· February 2025

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Expanding Training Data for Endoscopic Phenotyping of Eosinophilic Esophagitis.
Juming Xiong, Hou Xiong, Quan Liu, Ruining Deng, Regina N Tyree

Proc SPIE Int Soc Opt Eng· February 2025

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Towards Fine-grained Renal Vasculature Segmentation: Full-Scale Hierarchical Learning with FH-Seg.
Yitian Long, Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng

Proc SPIE Int Soc Opt Eng· February 2025

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Cross-organ Deployment of EOS Detection AI without Retraining: Feasibility and Limitation.
Yifei Wu, Juming Xiong, Tianyuan Yao, Ruining Deng, Junlin Guo

Proc SPIE Int Soc Opt Eng· February 2025

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GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model.
Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao

Proc SPIE Int Soc Opt Eng· February 2025

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Quantitative Analysis of Colonic Epithelial Cell Aging in a Cell-cycle like Model: Changes in Nucleus and Cytoplasm Along the Crypt Axis.
Shunxing Bao, Yaohong Wang, Gaurav Rudravaram, Rendong Zhang, Ruining Deng

Proc SPIE Int Soc Opt Eng· February 2025

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Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology.
Junchao Zhu, Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang

Proc SPIE Int Soc Opt Eng· February 2025

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mTREE: Multi-Level Text-Guided Representation End-to-End Learning for Whole Slide Image Analysis.
Quan Liu, Ruining Deng, Can Cui, Tianyuan Yao, Yuechen Yang

IS&T Int Symp Electron Imaging· January 2025

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Write Sentence with Images: Revisit the Large Vision Model with Visual Sentence.
Quan Liu, Can Cui, Ruining Deng, Tianyuan Yao, Yuechen Yang

IS&T Int Symp Electron Imaging· January 2025

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PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit.
Yuechen Yang, Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin

IS&T Int Symp Electron Imaging· January 2025

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HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis.
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong

Med Image Comput Comput Assist Interv· October 2024

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PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation.
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue

Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit· June 2024

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