Publications by authors named "Tianyuan Yao"

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Quantitative benchmarking of anomaly detection methods in digital pathology images.
Can Cui, Xindong Zheng, Ruining Deng, Quan Liu, Tianyuan Yao, Yaohong Wang

Mach Learn Health· December 2025

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Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology.
Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Yaohong Wang

J Med Imaging (Bellingham)· November 2025

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Img2ST-Net: efficient high-resolution spatial omics prediction from whole-slide histology images via fully convolutional image-to-image learning.
Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong

J Med Imaging (Bellingham)· November 2025

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Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment.
Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao

Commun Med (Lond)· November 2025

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Computer Vision Methods for Spatial Transcriptomics: A Survey.
Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu

bioRxiv· October 2025

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Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model.
Xueyuan Li, Can Cui, Ruining Deng, Yucheng Tang, Quan Liu, Tianyuan Yao

J Med Imaging (Bellingham)· September 2025

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White Matter Abnormalities and Cognition in Aging and Alzheimer Disease.
Christopher Peter, Aditi Sathe, Niranjana Shashikumar, Kimberly R Pechman, Abigail W Workmeister, Tianyuan Yao

JAMA Neurol· August 2025

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ZeroReg3D: a zero-shot registration pipeline for 3D consecutive histopathology image reconstruction.
Juming Xiong, Ruining Deng, Jialin Yue, Siqi Lu, Junlin Guo, Tianyuan Yao

J Med Imaging (Bellingham)· July 2025

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Genetic architecture of the limbic white matter microstructure in aging and Alzheimer's Disease.
Anna Lorenz, Aditi Sathe, Yisu Yang, Alaina Durant, Yiyang Wu, Tianyuan Yao

medRxiv· May 2025

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Deep learning-based free-water correction for single-shell diffusion MRI.
Tianyuan Yao, Derek B Archer, Praitayini Kanakaraj, Nancy Newlin, Shunxing Bao

Magn Reson Imaging· April 2025

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GloFinder: AI-empowered QuPath plugin for WSI-level glomerular detection, visualization, and curation.
Jialin Yue, Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo

J Pathol Inform· April 2025

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The effect of Alzheimer's disease genetic factors on limbic white matter microstructure.
Anna Lorenz, Aditi Sathe, Dimitrios Zaras, Yisu Yang, Alaina Durant, Tianyuan Yao

Alzheimers Dement· April 2025

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Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging.
Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W Remedios, Yaohong Wang

IS&T Int Symp Electron Imaging· February 2025

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Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results.
Jialin Yue, Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong

Proc SPIE Int Soc Opt Eng· February 2025

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Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology.
Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao

Proc SPIE Int Soc Opt Eng· February 2025

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Dataset Distillation in Medical Imaging: A Feasibility Study.
Muyang Li, Can Cui, Quan Liu, Ruining Deng, Tianyuan Yao

Proc SPIE Int Soc Opt Eng· February 2025

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Cross-organ Deployment of EOS Detection AI without Retraining: Feasibility and Limitation.
Yifei Wu, Juming Xiong, Tianyuan Yao, Ruining Deng, Junlin Guo

Proc SPIE Int Soc Opt Eng· February 2025

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Polyhedra Encoding Transformers: Enhancing Diffusion MRI Analysis Beyond Voxel and Volumetric Embedding.
Tianyuan Yao, Zhiyuan Li, Praitayini Kanakaraj, Derek B Archer, Kurt Schilling

Proc SPIE Int Soc Opt Eng· February 2025

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GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model.
Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Yaohong Wang

Proc SPIE Int Soc Opt Eng· February 2025

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Fluorescent identification of axons, dendrites and soma of neuronal retinal ganglion cells with a genetic marker as a tool for facilitating the study of neurodegeneration.
Puttipong Sripinun, Wennan Lu, Sergei Nikonov, Suhani Patel, Sarah Hennessy, Tianyuan Yao

FASEB Bioadv· January 2025

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mTREE: Multi-Level Text-Guided Representation End-to-End Learning for Whole Slide Image Analysis.
Quan Liu, Ruining Deng, Can Cui, Tianyuan Yao, Yuechen Yang

IS&T Int Symp Electron Imaging· January 2025

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Write Sentence with Images: Revisit the Large Vision Model with Visual Sentence.
Quan Liu, Can Cui, Ruining Deng, Tianyuan Yao, Yuechen Yang

IS&T Int Symp Electron Imaging· January 2025

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PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit.
Yuechen Yang, Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin

IS&T Int Symp Electron Imaging· January 2025

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HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis.
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong

Med Image Comput Comput Assist Interv· October 2024

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PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation.
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue

Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit· June 2024

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