Publications by authors named "Ruoshi Yuan"

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Mapping transcriptomic vector fields of single cells.
Xiaojie Qiu, Yan Zhang, Jorge D Martin-Rufino, Chen Weng, Shayan Hosseinzadeh, Ruoshi Yuan

Cell· February 2022

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The complex landscape of haematopoietic lineage commitments is encoded in the coarse-grained endogenous network.
Mengyao Wang, Junqiang Wang, Xingxing Zhang, Ruoshi Yuan

R Soc Open Sci· November 2021

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KLHL22 maintains PD-1 homeostasis and prevents excessive T cell suppression.
Xiao Albert Zhou, Jiadong Zhou, Long Zhao, Guihui Yu, Jun Zhan, Ruoshi Yuan

Proc Natl Acad Sci U S A· November 2020

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Toward a translationally independent RNA-based synthetic oscillator using deactivated CRISPR-Cas.
James Kuo, Ruoshi Yuan, Carlos Sánchez, Johan Paulsson, Pamela A Silver

Nucleic Acids Res· August 2020

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Adaptive Landscape Shaped by Core Endogenous Network Coordinates Complex Early Progenitor Fate Commitments in Embryonic Pancreas.
Junqiang Wang, Ruoshi Yuan, Xiaomei Zhu, Ping Ao

Sci Rep· January 2020

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Stochastic antagonism between two proteins governs a bacterial cell fate switch.
Nathan D Lord, Thomas M Norman, Ruoshi Yuan, Somenath Bakshi, Richard Losick

Science· October 2019

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Publisher Correction: Potential landscape of high dimensional nonlinear stochastic dynamics with large noise.
Ying Tang, Ruoshi Yuan, Gaowei Wang, Xiaomei Zhu, Ping Ao

Sci Rep· August 2019

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Correction to: 'Dynamical modelling of secondary metabolism and metabolic switches in 318'.
Xiao-Mei Zhu, Xing-Xing Zhang, Run-Tan Cheng, He-Lin Yu, Ruo-Shi Yuan

R Soc Open Sci· June 2019

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Dynamical modelling of secondary metabolism and metabolic switches in 318.
Xiao-Mei Zhu, Xing-Xing Zhang, Run-Tan Cheng, He-Lin Yu, Ruo-Shi Yuan

R Soc Open Sci· April 2019

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Endogenous Molecular-Cellular Network Cancer Theory: A Systems Biology Approach.
Gaowei Wang, Ruoshi Yuan, Xiaomei Zhu, Ping Ao

Methods Mol Biol· July 2018

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Beyond cancer genes: colorectal cancer as robust intrinsic states formed by molecular interactions.
Ruoshi Yuan, Suzhan Zhang, Jiekai Yu, Yanqin Huang, Demin Lu

Open Biol· November 2017

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Potential landscape of high dimensional nonlinear stochastic dynamics with large noise.
Ying Tang, Ruoshi Yuan, Gaowei Wang, Xiaomei Zhu, Ping Ao

Sci Rep· November 2017

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PCAF/GCN5-Mediated Acetylation of RPA1 Promotes Nucleotide Excision Repair.
Meimei Zhao, Rui Geng, Xiang Guo, Ruoshi Yuan, Xiao Zhou

Cell Rep· August 2017

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Decoding early myelopoiesis from dynamics of core endogenous network.
Hang Su, Gaowei Wang, Ruoshi Yuan, Junqiang Wang, Ying Tang

Sci China Life Sci· June 2017

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Cancer as robust intrinsic state shaped by evolution: a key issues review.
Ruoshi Yuan, Xiaomei Zhu, Gaowei Wang, Site Li, Ping Ao

Rep Prog Phys· April 2017

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Comment on "Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond" [J. Chem. Phys. 144, 094109 (2016)].
Ruoshi Yuan, Ying Tang, Ping Ao

J Chem Phys· October 2016

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Towards stable kinetics of large metabolic networks: Nonequilibrium potential function approach.
Yong-Cong Chen, Ruo-Shi Yuan, Ping Ao, Min-Juan Xu, Xiao-Mei Zhu

Phys Rev E· June 2016

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From molecular interaction to acute promyelocytic leukemia: Calculating leukemogenesis and remission from endogenous molecular-cellular network.
Ruoshi Yuan, Xiaomei Zhu, Jerald P Radich, Ping Ao

Sci Rep· April 2016

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Endogenous network states predict gain or loss of functions for genetic mutations in hepatocellular carcinoma.
Gaowei Wang, Hang Su, Helin Yu, Ruoshi Yuan, Xiaomei Zhu

J R Soc Interface· February 2016

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Core level regulatory network of osteoblast as molecular mechanism for osteoporosis and treatment.
Ruoshi Yuan, Shengfei Ma, Xiaomei Zhu, Jun Li, Yuhong Liang

Oncotarget· January 2016

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Anomalous free energy changes induced by topology.
Ying Tang, Ruoshi Yuan, Ping Ao

Phys Rev E Stat Nonlin Soft Matter Phys· December 2015

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Work relations connecting nonequilibrium steady states without detailed balance.
Ying Tang, Ruoshi Yuan, Jianhong Chen, Ping Ao

Phys Rev E Stat Nonlin Soft Matter Phys· April 2015

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Endogenous molecular-cellular hierarchical modeling of prostate carcinogenesis uncovers robust structure.
Xiaomei Zhu, Ruoshi Yuan, Leroy Hood, Ping Ao

Prog Biophys Mol Biol· January 2015

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Controlling symmetry-breaking states by a hidden quantity in multiplicative noise.
Ying Tang, Ruoshi Yuan, Jianhong Chen, Ping Ao

Phys Rev E Stat Nonlin Soft Matter Phys· November 2014

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Summing over trajectories of stochastic dynamics with multiplicative noise.
Ying Tang, Ruoshi Yuan, Ping Ao

J Chem Phys· July 2014

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