Publications by authors named "Rustem F Ismagilov"

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Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome.
Jacob T Barlow, Gabriela Leite, Anna E Romano, Rashin Sedighi, Christine Chang, Shreya Celly, Ali Rezaie, Ruchi Mathur, Mark Pimentel, Rustem F Ismagilov

Microbiome· November 2021

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Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis.
Jessica M Yano, Kristie Yu, Gregory P Donaldson, Gauri G Shastri, Phoebe Ann, Liang Ma, Cathryn R Nagler, Rustem F Ismagilov, Sarkis K Mazmanian, Elaine Y Hsiao

Cell· April 2015

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Inducible, but not constitutive, pancreatic REG/Reg isoforms are regulated by intestinal microbiota and pancreatic diseases.
Yixuan D Zhou, Macy R Komnick, Fabiola Sepulveda, Grace Liu, Elida Nieves-Ortiz, Rustem F Ismagilov

Mucosal Immunol· August 2025

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COVID-19 study quantifying daily viral loads confirms throat samples are key to early diagnosis.
Alexander Viloria Winnett, Natasha Shelby, Rustem F Ismagilov

Diagn Microbiol Infect Dis· April 2025

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Immunoglobulin A controls intestinal virus colonization to preserve immune homeostasis.
Wioletta Lisicka, Zachary M Earley, Joseph J Sifakis, Steven A Erickson, Jonathan R Mattingly, Rustem F Ismagilov

Cell Host Microbe· April 2025

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The ratio between SARS-CoV-2 RNA viral load and culturable viral titre differs depending on the stage of infection: a case study of household transmission in an adult male.
Michael K Porter, Alexander Viloria Winnett, Linhui Hao, Natasha Shelby, Jessica A Reyes, Rustem F Ismagilov

Access Microbiol· February 2025

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Validating Combination Throat-Nasal Swab Specimens for COVID-19 Tests Would Improve Early Detection, Especially for the Most Vulnerable.
Alexander Viloria Winnett, Timothy Stenzel, Rustem F Ismagilov

Clin Infect Dis· October 2024

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Inducible, but not constitutive, pancreatic isoforms are regulated by intestinal microbiota and pancreatic diseases.
Yixuan Zhou, Macy R Komnick, Fabiola Sepulveda, Grace Liu, Elida Nieves-Ortiz, Rustem F Ismagilov

bioRxiv· October 2024

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Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples.
Natalie J Wu-Woods, Jacob T Barlow, Florian Trigodet, Dustin G Shaw, Anna E Romano, Rustem F Ismagilov

Nat Methods· November 2023

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Index cases first identified by nasal-swab rapid COVID-19 tests had more transmission to household contacts than cases identified by other test types.
Jenny Ji, Alexander Viloria Winnett, Natasha Shelby, Jessica A Reyes, Noah W Schlenker, Rustem F Ismagilov

PLoS One· October 2023

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Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa.
Roberta Poceviciute, Said R Bogatyrev, Anna E Romano, Amanda H Dilmore, Octavio Mondragón-Palomino, Rustem F Ismagilov

NPJ Biofilms Microbiomes· September 2023

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Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types.
Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Rustem F Ismagilov

Microbiol Spectr· August 2023

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Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods.
Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Rustem F Ismagilov

PNAS Nexus· March 2023

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GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology.
Zachary M Earley, Wioletta Lisicka, Joseph J Sifakis, Raúl Aguirre-Gamboa, Anita Kowalczyk, Rustem F Ismagilov

Immunity· January 2023

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Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips.
Alyssa M Carter, Alexander Viloria Winnett, Anna E Romano, Reid Akana, Natasha Shelby, Rustem F Ismagilov

Open Forum Infect Dis· January 2023

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Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking.
Alexander Viloria Winnett, Michael K Porter, Anna E Romano, Emily S Savela, Reid Akana, Rustem F Ismagilov

Microbiol Spectr· December 2022

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Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa.
Octavio Mondragón-Palomino, Roberta Poceviciute, Antti Lignell, Jessica A Griffiths, Heli Takko, Rustem F Ismagilov

Proc Natl Acad Sci U S A· May 2022

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Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection.
Emily S Savela, Alexander Viloria Winnett, Anna E Romano, Michael K Porter, Natasha Shelby, Rustem F Ismagilov

J Clin Microbiol· February 2022

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Single-cell measurement of higher-order 3D genome organization with scSPRITE.
Mary V Arrastia, Joanna W Jachowicz, Noah Ollikainen, Matthew S Curtis, Charlotte Lai, Rustem F Ismagilov

Nat Biotechnol· January 2022

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Alterations in the gut microbiota contribute to cognitive impairment induced by the ketogenic diet and hypoxia.
Christine A Olson, Alonso J Iñiguez, Grace E Yang, Ping Fang, Geoffrey N Pronovost, Rustem F Ismagilov

Cell Host Microbe· September 2021

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Quantitative SARS-CoV-2 viral-load curves in paired saliva and nasal swabs inform appropriate respiratory sampling site and analytical test sensitivity required for earliest viral detection.
Emily S Savela, Alexander Winnett, Anna E Romano, Michael K Porter, Natasha Shelby, Rustem F Ismagilov

medRxiv· August 2021

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Microbiota regulate social behaviour via stress response neurons in the brain.
Wei-Li Wu, Mark D Adame, Chia-Wei Liou, Jacob T Barlow, Tzu-Ting Lai, Rustem F Ismagilov

Nature· July 2021

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SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans.
Alexander Winnett, Matthew M Cooper, Natasha Shelby, Anna E Romano, Jessica A Reyes, Rustem F Ismagilov

medRxiv· December 2020

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Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community.
Tahmineh Khazaei, Rory L Williams, Said R Bogatyrev, John C Doyle, Christopher S Henry, Rustem F Ismagilov

Sci Adv· August 2020

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Publisher Correction: A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities.
Jacob T Barlow, Said R Bogatyrev, Rustem F Ismagilov

Nat Commun· July 2020

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A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities.
Jacob T Barlow, Said R Bogatyrev, Rustem F Ismagilov

Nat Commun· May 2020

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