Publications by authors named "Ryan Emenecker"

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Protein surface chemistry encodes an adaptive tolerance to desiccation.
Paulette Sofía Romero-Pérez, Haley M Moran, David P Cordone, Azeem Horani, Alexander Truong, Ryan J Emenecker

Cell Syst· October 2025

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Sequence-based prediction of intermolecular interactions driven by disordered regions.
Garrett M Ginell, Ryan J Emenecker, Jeffrey M Lotthammer, Alex T Keeley, Stephen P Plassmeyer

Science· May 2025

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Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms.
Luke Lambourne, Kaia Mattioli, Clarissa Santoso, Gloria Sheynkman, Sachi Inukai, Ryan J Emenecker

Mol Cell· April 2025

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An improved toolkit of gateway- and gibson assembly-compatible vectors for protoplast transfection and agrobacterium-mediated plant transformation.
Jeffrey R Allen, Michael Flanagan, Sunita Pathak, Samantha K Emenecker, Ryan J Emenecker

BMC Res Notes· April 2025

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Structural dynamics of the intrinsically disordered linker region of cardiac troponin T.
Jasmine Cubuk, Lina Greenberg, Akiva E Greenberg, Ryan J Emenecker, Melissa D Stuchell-Brereton

bioRxiv· October 2024

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Protein surface chemistry encodes an adaptive tolerance to desiccation.
Paulette Sofía Romero-Pérez, Haley M Moran, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval, Ryan J Emenecker

bioRxiv· October 2024

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Identification of plant transcriptional activation domains.
Nicholas Morffy, Lisa Van den Broeck, Caelan Miller, Ryan J Emenecker, John A Bryant

Nature· August 2024

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Direct prediction of intermolecular interactions driven by disordered regions.
Garrett M Ginell, Ryan J Emenecker, Jeffrey M Lotthammer, Emery T Usher, Alex S Holehouse

bioRxiv· June 2024

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Direct prediction of intrinsically disordered protein conformational properties from sequence.
Jeffrey M Lotthammer, Garrett M Ginell, Daniel Griffith, Ryan J Emenecker, Alex S Holehouse

Nat Methods· March 2024

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Abscisic acid biosynthesis is necessary for full auxin effects on hypocotyl elongation.
Ryan J Emenecker, Joseph Cammarata, Irene Yuan, Caroline Howard, Shekufeh Ebrahimi Naghani

Development· December 2023

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Sequence-ensemble-function relationships for disordered proteins in live cells.
Ryan J Emenecker, Karina Guadalupe, Nora M Shamoon, Shahar Sukenik, Alex S Holehouse

bioRxiv· November 2023

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Sequence-ensemble-function relationships for disordered proteins in live cells.
Alex Holehouse, Ryan Emenecker, Karina Guadalupe, Nora Shamoon, Shahar Sukenik

Res Sq· November 2023

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An Improved Toolkit of Gateway- and Gibson Assembly-Compatible Vectors for Protoplast Transfection and Agrobacterium-Mediated Plant Transformation.
Jeffrey Allen, Michael Flanagan, Sunita Pathak, Samantha Emenecker, Ryan Emenecker

Res Sq· November 2023

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Nitric oxide-mediated S-nitrosylation of IAA17 protein in intrinsically disordered region represses auxin signaling.
Hongwei Jing, Xiaolu Yang, Ryan J Emenecker, Jian Feng, Jian Zhang

J Genet Genomics· July 2023

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Intrinsically disordered CO sensors.
Ryan J Emenecker, Alex S Holehouse

Nat Cell Biol· July 2022

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Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning.
Hongwei Jing, David A Korasick, Ryan J Emenecker, Nicholas Morffy, Edward G Wilkinson

Nat Commun· July 2022

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Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure.
Ryan J Emenecker, Daniel Griffith, Alex S Holehouse

Biophys J· October 2021

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Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development.
M Sankaranarayanan, Ryan J Emenecker, Elise L Wilby, Marcus Jahnel, Irmela R E A Trussina

Dev Cell· October 2021

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Biological Phase Separation and Biomolecular Condensates in Plants.
Ryan J Emenecker, Alex S Holehouse, Lucia C Strader

Annu Rev Plant Biol· June 2021

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Sequence determinants of in cell condensate morphology, dynamics, and oligomerization as measured by number and brightness analysis.
Ryan J Emenecker, Alex S Holehouse, Lucia C Strader

Cell Commun Signal· June 2021

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Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production.
Alex Harkess, Fionn McLoughlin, Natasha Bilkey, Kiona Elliott, Ryan Emenecker

J Exp Bot· March 2021

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Emerging Roles for Phase Separation in Plants.
Ryan J Emenecker, Alex S Holehouse, Lucia C Strader

Dev Cell· October 2020

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Auxin-Abscisic Acid Interactions in Plant Growth and Development.
Ryan J Emenecker, Lucia C Strader

Biomolecules· February 2020

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Mechanism of microtubule plus-end tracking by the plant-specific SPR1 protein and its development as a versatile plus-end marker.
Rachappa Balkunde, Layla Foroughi, Eric Ewan, Ryan Emenecker, Valeria Cavalli

J Biol Chem· November 2019

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Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana.
Samantha K Powers, Alex S Holehouse, David A Korasick, Katherine H Schreiber, Natalie M Clark, Ryan Emenecker

Mol Cell· October 2019

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