Publications by authors named "Sally Partridge"

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Impacts of mobile genetic elements on antimicrobial resistance genes in gram-negative pathogens: Current insights and genomic approaches.
Bethany J Cross, Sally R Partridge, Anna E Sheppard

Microbiol Res· January 2026

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Genomic dissection of the antimicrobial resistance epidemiology of Typhimurium.
Sandeep Kaur, Sally R Partridge, Michael Payne, Vitali Sintchenko, Ruiting Lan

Front Microbiol· December 2025

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Surveillance Outcome Program (GnSOP) Bloodstream Infection Annual Report 2024.
Jan Bell, Alicia Fajardo Lubian, Sally Partridge, Thomas Gottlieb, Jennifer Robson

Commun Dis Intell (2018)· November 2025

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SAND: a comprehensive annotation of class D β-lactamases using structural alignment-based numbering.
Fedaa Attana, Soobin Kim, James Spencer, Bogdan I Iorga, Jean-Denis Docquier, Sally R Partridge

Antimicrob Agents Chemother· July 2025

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Surveillance Outcome Program (GnSOP) Bloodstream Infection Annual Report 2023.
Jan M Bell, Alicia Fajardo Lubian, Sally R Partridge, Thomas Gottlieb, Jennifer Robson

Commun Dis Intell (2018)· February 2025

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Surveillance Outcome Program (GnSOP) Bloodstream Infection Annual Report 2022.
Jan M Bell, Alicia Fajardo Lubian, Sally R Partridge, Thomas Gottlieb, Jennifer Robson

Commun Dis Intell (2018)· November 2023

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The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez

Nat Commun· April 2023

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Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez

Nat Commun· April 2023

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Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.
Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Sally R Partridge

Nat Commun· March 2023

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Surveillance Outcome Program (GnSOP).
Jan M Bell, Alicia Fajardo Lubian, Sally R Partridge, Thomas Gottlieb, Jenny Robson

Commun Dis Intell (2018)· November 2022

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Co-Occurrence of Multidrug Resistant Klebsiella pneumoniae Pathogenic Clones of Human Relevance in an Equine Pneumonia Case.
Carola Venturini, Bethany Bowring, Sally R Partridge, Nouri L Ben Zakour, Alicia Fajardo-Lubian

Microbiol Spectr· June 2022

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Sepsis Outcome Programme (GnSOP) Annual Report 2020.
Jan M Bell, Alicia Fajardo Lubian, Sally R Partridge, Thomas Gottlieb, Jonathan Iredell

Commun Dis Intell (2018)· March 2022

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Classifying mobile genetic elements and their interactions from sequence data: The importance of existing biological knowledge.
Sally R Partridge, Virve I Enne, Elisabeth Grohmann, Ruth M Hall, Julian I Rood

Proc Natl Acad Sci U S A· August 2021

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Third generation cephalosporins and piperacillin/tazobactam have distinct impacts on the microbiota of critically ill patients.
Hasinika K A H Gamage, Carola Venturini, Sasha G Tetu, Masrura Kabir, Vineet Nayyar, Sally R Partridge

Sci Rep· March 2021

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Plasmid DNA Isolation and Visualization: Isolation and Characterization of Plasmids from Clinical Samples.
Kaitlin A Tagg, Carola Venturini, Muhammad Kamruzzaman, Andrew N Ginn, Sally R Partridge

Methods Mol Biol· January 2021

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Comment on "Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection" by A.N. Zhang et al.
Paul H Roy, Sally R Partridge, Ruth M Hall

Microbiome· January 2021

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Australian Group on Antimicrobial Resistance (AGAR) Australian Gram-negative Sepsis Outcome Programme (GNSOP) Annual Report 2019.
Jan M Bell, Alicia Fajardo Lubian, Sally Partridge, Thomas Gottlieb, Jonathan Iredell

Commun Dis Intell (2018)· October 2020

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Emergence of a Plasmid-Encoded Resistance-Nodulation-Division Efflux Pump Conferring Resistance to Multiple Drugs, Including Tigecycline, in Klebsiella pneumoniae.
Luchao Lv, Miao Wan, Chengzhen Wang, Xun Gao, Qiwen Yang, Sally R Partridge

mBio· March 2020

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Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a clinical strain.
João Botelho, Cédric Lood, Sally R Partridge, Vera van Noort, Rob Lavigne

Emerg Microbes Infect· December 2019

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Diversity of P1 phage-like elements in multidrug resistant Escherichia coli.
Carola Venturini, Tiziana Zingali, Ethan R Wyrsch, Bethany Bowring, Jonathan Iredell, Sally R Partridge

Sci Rep· December 2019

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Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.
Sally R Partridge, Vincenzo Di Pilato, Yohei Doi, Michael Feldgarden, Daniel H Haft

J Antimicrob Chemother· October 2018

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Mobile Genetic Elements Associated with Antimicrobial Resistance.
Sally R Partridge, Stephen M Kwong, Neville Firth, Slade O Jensen

Clin Microbiol Rev· October 2018

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Ecological effects of cefepime use during antibiotic cycling on the Gram-negative enteric flora of ICU patients.
Carola Venturini, Andrew N Ginn, Brooke E Wilson, Guy Tsafnat, Ian Paulsen, Sally R Partridge

Intensive Care Med Exp· July 2018

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Automated annotation of mobile antibiotic resistance in Gram-negative bacteria: the Multiple Antibiotic Resistance Annotator (MARA) and database.
Sally R Partridge, Guy Tsafnat

J Antimicrob Chemother· April 2018

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Locally Acquired mcr-1 in Escherichia coli, Australia, 2011 and 2013.
Justin A Ellem, Andrew N Ginn, Sharon C-A Chen, John Ferguson, Sally R Partridge

Emerg Infect Dis· July 2017

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