Publications by authors named "Samirkumar Amin"

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Energetics of whole genome doubling and genomic instability.
Richard J Beck, Vural Tagal, Samirkumar Amin, Samuel F Bakhoum, Carlo C Maley

Cancer Lett· October 2025

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Tumor-initiating genetics and therapy drive divergent molecular evolution in IDH-mutant gliomas.
Tamrin Chowdhury, C Mircea S Tesileanu, Emre Kocakavuk, Kevin C Johnson, Jooho Lee, Samirkumar B Amin

bioRxiv· July 2025

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Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Samirkumar B Amin, Benjamin J Raphael

Nature· February 2023

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Live-Cell Imaging Shows Uneven Segregation of Extrachromosomal DNA Elements and Transcriptionally Active Extrachromosomal DNA Hubs in Cancer.
Eunhee Yi, Amit D Gujar, Molly Guthrie, Hoon Kim, Dacheng Zhao, Samirkumar B Amin

Cancer Discov· February 2022

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Radiotherapy is associated with a deletion signature that contributes to poor outcomes in patients with cancer.
Emre Kocakavuk, Kevin J Anderson, Frederick S Varn, Kevin C Johnson, Samirkumar B Amin

Nat Genet· July 2021

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Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure.
Kadir C Akdemir, Victoria T Le, Justin M Kim, Sarah Killcoyne, Devin A King, Samirkumar B Amin

Nat Genet· November 2020

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Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.
Hoon Kim, Nam-Phuong Nguyen, Kristen Turner, Sihan Wu, Amit D Gujar, Samirkumar B Amin

Nat Genet· September 2020

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Molecular and clonal evolution in recurrent metastatic gliosarcoma.
Kevin J Anderson, Aaron C Tan, Jonathon Parkinson, Michael Back, Marina Kastelan, Samirkumar B Amin

Cold Spring Harb Mol Case Stud· February 2020

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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Samirkumar B Amin, Benjamin J Raphael

Nature· February 2020

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Comparative Molecular Life History of Spontaneous Canine and Human Gliomas.
Samirkumar B Amin, Kevin J Anderson, C Elizabeth Boudreau, Emmanuel Martinez-Ledesma, Emre Kocakavuk

Cancer Cell· February 2020

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Longitudinal molecular trajectories of diffuse glioma in adults.
Floris P Barthel, Kevin C Johnson, Frederick S Varn, Anzhela D Moskalik, Georgette Tanner, Samirkumar B Amin

Nature· December 2019

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p53 Is a Master Regulator of Proteostasis in SMARCB1-Deficient Malignant Rhabdoid Tumors.
Alessandro Carugo, Rosalba Minelli, Luigi Sapio, Melinda Soeung, Federica Carbone, Samirkumar Amin

Cancer Cell· February 2019

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An Screen Identifies PYGO2 as a Driver for Metastatic Prostate Cancer.
Xin Lu, Xiaolu Pan, Chang-Jiun Wu, Di Zhao, Shan Feng, Samirkumar B Amin

Cancer Res· July 2018

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An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues.
Christopher Terranova, Ming Tang, Elias Orouji, Mayinuer Maitituoheti, Ayush Raman, Samirkumar Amin

J Vis Exp· April 2018

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TumorFusions: an integrative resource for cancer-associated transcript fusions.
Xin Hu, Qianghu Wang, Ming Tang, Floris Barthel, Samirkumar Amin

Nucleic Acids Res· January 2018

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Navigating the Cancer Transcriptome by Decoding Divergent Oncogenic States.
Samirkumar B Amin, Roel G W Verhaak

Cell Syst· August 2017

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Systematic Epigenomic Analysis Reveals Chromatin States Associated with Melanoma Progression.
Petko Fiziev, Kadir C Akdemir, John P Miller, Emily Z Keung, Neha S Samant, Samirkumar B Amin, Benjamin A Garcia

Cell Rep· April 2017

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Systematic analysis of telomere length and somatic alterations in 31 cancer types.
Floris P Barthel, Wei Wei, Ming Tang, Emmanuel Martinez-Ledesma, Xin Hu, Samirkumar B Amin

Nat Genet· March 2017

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Synthetic vulnerabilities of mesenchymal subpopulations in pancreatic cancer.
Giannicola Genovese, Alessandro Carugo, James Tepper, Frederick Scott Robinson, Liren Li, Samirkumar Amin, Huamin Wang

Nature· February 2017

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miR-182-5p Induced by STAT3 Activation Promotes Glioma Tumorigenesis.
Jianfei Xue, Aidong Zhou, Yamei Wu, Saint-Aaron Morris, Kangyu Lin, Samirkumar Amin

Cancer Res· July 2016

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A unique method of oral ulceration management in a patient with pathological tongue thrust.
Mervyn Huston, Samirkumar Amin, Benjamin Collard, Andrew Baker

J Paediatr Child Health· July 2015

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