Publications by authors named "Sean D Hooper"

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Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing.
Xiang Jiao, Sean D Hooper, Tatjana Djureinovic, Chatarina Larsson, Fredrik Wärnberg

BMC Genomics· March 2013

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Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder.
Sean D Hooper, Anna C V Johansson, Christian Tellgren-Roth, Eva-Lena Stattin, Niklas Dahl

BMC Med Genet· December 2012

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Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements.
Sean D Hooper, Xiang Jiao, Elisabeth Sundström, Farah L Rehman, Christian Tellgren-Roth

BMC Res Notes· November 2012

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Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia.
Larry Mansouri, Rebeqa Gunnarsson, Lesley-Ann Sutton, Adam Ameur, Sean D Hooper

Am J Hematol· July 2012

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Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing.
Xiang Jiao, Magnus Rosenlund, Sean D Hooper, Christian Tellgren-Roth, Liqun He

PLoS One· December 2011

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Medusa: A tool for exploring and clustering biological networks.
Georgios A Pavlopoulos, Sean D Hooper, Alejandro Sifrim, Reinhard Schneider, Jan Aerts

BMC Res Notes· October 2011

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Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes.
Iain Anderson, Carmen Scheuner, Markus Göker, Kostas Mavromatis, Sean D Hooper

PLoS One· September 2011

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
Amrita Pati, Natalia N Ivanova, Natalia Mikhailova, Galina Ovchinnikova, Sean D Hooper

Nat Methods· June 2010

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The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.
Athanasios Lykidis, Danilo Pérez-Pantoja, Thomas Ledger, Kostantinos Mavromatis, Iain J Anderson, Sean D Hooper

PLoS One· March 2010

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Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
Sean D Hooper, Daniel Dalevi, Amrita Pati, Konstantinos Mavromatis, Natalia N Ivanova

Bioinformatics· February 2010

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Dongying Wu, Philip Hugenholtz, Konstantinos Mavromatis, Rüdiger Pukall, Eileen Dalin, Sean D Hooper

Nature· December 2009

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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
Konstantinos Mavromatis, Ken Chu, Natalia Ivanova, Sean D Hooper, Victor M Markowitz

PLoS One· November 2009

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Microbial co-habitation and lateral gene transfer: what transposases can tell us.
Sean D Hooper, Konstantinos Mavromatis, Nikos C Kyrpides

Genome Biol· September 2009

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jClust: a clustering and visualization toolbox.
Georgios A Pavlopoulos, Charalampos N Moschopoulos, Sean D Hooper, Reinhard Schneider, Sophia Kossida

Bioinformatics· August 2009

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Genomic characterization of methanomicrobiales reveals three classes of methanogens.
Iain Anderson, Luke E Ulrich, Boguslaw Lupa, Dwi Susanti, Iris Porat, Sean D Hooper

PLoS One· June 2009

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Focus: Synergistetes.
Philip Hugenholtz, Sean D Hooper, Nikos C Kyrpides

Environ Microbiol· June 2009

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Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.
Sean D Hooper, Iain J Anderson, Amrita Pati, Daniel Dalevi, Konstantinos Mavromatis

Nucleic Acids Res· April 2009

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OnTheFly: a tool for automated document-based text annotation, data linking and network generation.
Georgios A Pavlopoulos, Evangelos Pafilis, M Kuhn, Sean D Hooper, Reinhard Schneider

Bioinformatics· April 2009

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.
Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper

PLoS One· March 2009

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Annotation of metagenome short reads using proxygenes.
Daniel Dalevi, Natalia N Ivanova, Konstantinos Mavromatis, Sean D Hooper, Ernest Szeto

Bioinformatics· August 2008

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A molecular study of microbe transfer between distant environments.
Sean D Hooper, Jeroen Raes, Konrad U Foerstner, Eoghan D Harrington, Daniel Dalevi

PLoS One· July 2008

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Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.
Sean D Hooper, Stephanie Boué, Roland Krause, Lars J Jensen, Christopher E Mason

Mol Syst Biol· February 2007

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Medusa: a simple tool for interaction graph analysis.
Sean D Hooper, Peer Bork

Bioinformatics· December 2005

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Environments shape the nucleotide composition of genomes.
Konrad U Foerstner, Christian von Mering, Sean D Hooper, Peer Bork

EMBO Rep· December 2005

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Systematic association of genes to phenotypes by genome and literature mining.
Jan O Korbel, Tobias Doerks, Lars J Jensen, Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D Hooper

PLoS Biol· May 2005

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