Publications by authors named "Victor M Markowitz"

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IMG/M: integrated genome and metagenome comparative data analysis system.
I-Min A Chen, Victor M Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto

Nucleic Acids Res· January 2017

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IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.
David Paez-Espino, I-Min A Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Victor M Markowitz

Nucleic Acids Res· January 2017

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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.
I-Min A Chen, Victor M Markowitz, Krishna Palaniappan, Ernest Szeto, Ken Chu

BMC Genomics· April 2016

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Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
Marcel Huntemann, Natalia N Ivanova, Konstantinos Mavromatis, H James Tripp, David Paez-Espino, Victor M Markowitz

Stand Genomic Sci· March 2016

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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
Marcel Huntemann, Natalia N Ivanova, Konstantinos Mavromatis, H James Tripp, David Paez-Espino, Victor M Markowitz

Stand Genomic Sci· February 2016

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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.
Dwi Susanti, Eric F Johnson, Alla Lapidus, James Han, T B K Reddy, Victor M Markowitz

Stand Genomic Sci· January 2016

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Ten years of maintaining and expanding a microbial genome and metagenome analysis system.
Victor M Markowitz, I-Min A Chen, Ken Chu, Amrita Pati, Natalia N Ivanova

Trends Microbiol· November 2015

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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
Marcel Huntemann, Natalia N Ivanova, Konstantinos Mavromatis, H James Tripp, David Paez-Espino, Victor M Markowitz

Stand Genomic Sci· October 2015

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High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum.
Mitsuo Sakamoto, Alla L Lapidus, James Han, Stephan Trong, Matthew Haynes, Victor M Markowitz

Stand Genomic Sci· September 2015

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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea.
Spyridon Ntougias, Alla Lapidus, Alex Copeland, T B K Reddy, Amrita Pati, Victor M Markowitz

Stand Genomic Sci· September 2015

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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.
Michalis Hadjithomas, I-Min Amy Chen, Ken Chu, Anna Ratner, Krishna Palaniappan, Victor M Markowitz

mBio· July 2015

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High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass.
Sivan Laviad, Alla Lapidus, Alex Copeland, Tbk Reddy, Marcel Huntemann, Victor M Markowitz

Stand Genomic Sci· July 2015

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Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a.
Elise A Rooney, Kenneth T Rowe, Anna Guseva, Marcel Huntemann, James K Han, Victor M Markowitz

Genome Announc· July 2015

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Draft genome sequences of 10 strains of the genus exiguobacterium.
Tatiana A Vishnivetskaya, Archana Chauhan, Alice C Layton, Susan M Pfiffner, Marcel Huntemann, Victor M Markowitz

Genome Announc· October 2014

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IMG/M 4 version of the integrated metagenome comparative analysis system.
Victor M Markowitz, I-Min A Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan

Nucleic Acids Res· January 2014

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IMG 4 version of the integrated microbial genomes comparative analysis system.
Victor M Markowitz, I-Min A Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto

Nucleic Acids Res· January 2014

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Improving microbial genome annotations in an integrated database context.
I-Min A Chen, Victor M Markowitz, Ken Chu, Iain Anderson, Konstantinos Mavromatis

PLoS One· August 2013

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IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.
Victor M Markowitz, I-Min A Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan

PLoS One· March 2013

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IMG/M: the integrated metagenome data management and comparative analysis system.
Victor M Markowitz, I-Min A Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan

Nucleic Acids Res· January 2012

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The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.
Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A Chen, Tatyana Smirnova, Victor M Markowitz

Nucleic Acids Res· January 2012

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IMG: the Integrated Microbial Genomes database and comparative analysis system.
Victor M Markowitz, I-Min A Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto

Nucleic Acids Res· January 2012

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A catalog of reference genomes from the human microbiome.

Science· May 2010

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The integrated microbial genomes system: an expanding comparative analysis resource.
Victor M Markowitz, I-Min A Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto

Nucleic Acids Res· January 2010

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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Konstantinos Liolios, I-Min A Chen, Konstantinos Mavromatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M Markowitz

Nucleic Acids Res· January 2010

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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
Konstantinos Mavromatis, Ken Chu, Natalia Ivanova, Sean D Hooper, Victor M Markowitz

PLoS One· November 2009

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