Publications by authors named "Sean McCorkle"

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Pathway-based analyses of gene expression profiles at low doses of ionizing radiation.
Xihaier Luo, Seyednami Niyakan, Patrick Johnstone, Sean McCorkle, Gilchan Park

Front Bioinform· May 2024

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Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis.
Hai Shi, Evan Ernst, Nicolas Heinzel, Sean McCorkle, Hardy Rolletschek

BMC Plant Biol· October 2023

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An expanded role for the transcription factor in the biosynthesis of triacylglycerols during seed development.
Cathleen Kuczynski, Sean McCorkle, Jantana Keereetaweep, John Shanklin, Jorg Schwender

Front Plant Sci· August 2022

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Widespread polycistronic gene expression in green algae.
Sean D Gallaher, Rory J Craig, Iniyan Ganesan, Samuel O Purvine, Sean R McCorkle

Proc Natl Acad Sci U S A· February 2021

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria, Sean R McCorkle

Nucleic Acids Res· January 2021

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria, Sean R McCorkle

Nucleic Acids Res· January 2021

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Cellular Plasticity in Response to Suppression of Storage Proteins in the Embryo.
Hardy Rolletschek, Jörg Schwender, Christina König, Kent D Chapman, Trevor Romsdahl, Sean McCorkle

Plant Cell· July 2020

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Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma.
Wei Cao, Hayan Lee, Wei Wu, Aubhishek Zaman, Sean McCorkle

Nat Commun· July 2020

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Cell context dependent p53 genome-wide binding patterns and enrichment at repeats.
Krassimira Botcheva, Sean R McCorkle

PLoS One· December 2015

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Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638.
Safiyh Taghavi, Xiao Wu, Liming Ouyang, Yian Biao Zhang, Andrea Stadler, Sean McCorkle

PLoS One· December 2015

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The metagenome of an anaerobic microbial community decomposing poplar wood chips.
Daniel van der Lelie, Safiyh Taghavi, Sean M McCorkle, Luen-Luen Li, Stephanie A Malfatti

PLoS One· December 2012

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Bioprospecting metagenomics for new glycoside hydrolases.
Jack Gilbert, Luen-Luen Li, Safiyh Taghavi, Sean M McCorkle, Susannah Tringe

Methods Mol Biol· December 2012

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Distinct p53 genomic binding patterns in normal and cancer-derived human cells.
Krassimira Botcheva, Sean R McCorkle, W R McCombie, John J Dunn, Carl W Anderson

Cell Cycle· December 2011

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Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases.
Luen-Luen Li, Safiyh Taghavi, Sean M McCorkle, Yian-Biao Zhang, Michael G Blewitt

Biotechnol Biofuels· August 2011

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The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.
Paul J Janssen, Rob Van Houdt, Hugo Moors, Pieter Monsieurs, Nicolas Morin, Sean McCorkle

PLoS One· May 2010

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Differential binding of Escherichia coli McrA protein to DNA sequences that contain the dinucleotide m5CpG.
Elizabeth A Mulligan, Eli Hatchwell, Sean R McCorkle, John J Dunn

Nucleic Acids Res· April 2010

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Bioprospecting metagenomes: glycosyl hydrolases for converting biomass.
Luen-Luen Li, Sean R McCorkle, Sebastien Monchy, Safiyh Taghavi, Daniel van der Lelie

Biotechnol Biofuels· May 2009

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Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen.
Celine Lesaulnier, Dimitris Papamichail, Sean McCorkle, Bernard Ollivier, Steven Skiena

Environ Microbiol· April 2008

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A new binding motif for the transcriptional repressor REST uncovers large gene networks devoted to neuronal functions.
Stefanie J Otto, Sean R McCorkle, John Hover, Cecilia Conaco, Jong-Jin Han

J Neurosci· June 2007

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Paired-end genomic signature tags: a method for the functional analysis of genomes and epigenomes.
John J Dunn, Sean R McCorkle, Logan Everett, Carl W Anderson

Genet Eng (N Y)· January 2007

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A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome.
Chaolin Zhang, Zhenyu Xuan, Stefanie Otto, John R Hover, Sean R McCorkle

Nucleic Acids Res· May 2006

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Use of single-point genome signature tags as a universal tagging method for microbial genome surveys.
Daniel van der Lelie, Celine Lesaulnier, Sean McCorkle, Joke Geets, Safiyh Taghavi

Appl Environ Microbiol· March 2006

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Linking enzyme sequence to function using Conserved Property Difference Locator to identify and annotate positions likely to control specific functionality.
Kimberly M Mayer, Sean R McCorkle, John Shanklin

BMC Bioinformatics· November 2005

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Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.
Soren Impey, Sean R McCorkle, Hyunjoo Cha-Molstad, Jami M Dwyer, Gregory S Yochum

Cell· December 2004

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Protein aggregation during overexpression limited by peptide extensions with large net negative charge.
Yian-Biao Zhang, Jason Howitt, Sean McCorkle, Paul Lawrence, Karen Springer

Protein Expr Purif· August 2004

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