Publications by authors named "Sean Sykes"

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The impact of an oral purified microbiome therapeutic on the gastrointestinal microbiome.
Jessica A Bryant, Marin Vulić, Emily A Walsh, Edward G Allen, Nicholas J Beauchemin, Sean M Sykes

Nat Med· January 2026

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Comparison of Simulation-Based versus Cadaveric-Tissue-Based Ocular Trauma Training on Novice Ophthalmologists: Repair of Corneal Laceration Model.
Boonkit Purt, Timothy Ducey, Sean Sykes, Joseph F Pasternak, Denise S Ryan

J Acad Ophthalmol (2017)· January 2021

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Tracing Genetic Exchange and Biogeography of var. at the Global Population Level.
Johanna Rhodes, Christopher A Desjardins, Sean M Sykes, Mathew A Beale, Mathieu Vanhove

Genetics· September 2017

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Population genomics and the evolution of virulence in the fungal pathogen .
Christopher A Desjardins, Charles Giamberardino, Sean M Sykes, Chen-Hsin Yu, Jennifer L Tenor

Genome Res· July 2017

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Genome Diversity, Recombination, and Virulence across the Major Lineages of .
José F Muñoz, Rhys A Farrer, Christopher A Desjardins, Juan E Gallo, Sean Sykes

mSphere· September 2016

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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Liang Ma, Zehua Chen, Da Wei Huang, Geetha Kutty, Mayumi Ishihara, Sean Sykes

Nat Commun· February 2016

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Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt.
Soo Chan Lee, R Blake Billmyre, Alicia Li, Sandra Carson, Sean M Sykes

mBio· July 2014

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Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen.
Zehua Chen, Diego A Martinez, Sharvari Gujja, Sean M Sykes, Qiandong Zeng

G3 (Bethesda)· April 2014

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Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.
Rays H Y Jiang, Irene de Bruijn, Brian J Haas, Rodrigo Belmonte, Lars Löbach, Sean Sykes

PLoS Genet· June 2013

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Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis.
Liang Ma, Da-Wei Huang, Christina A Cuomo, Sean Sykes, Giovanna Fantoni

FASEB J· May 2013

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Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.
John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka

PLoS One· December 2012

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The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum.
Daniel E Neafsey, Kevin Galinsky, Rays H Y Jiang, Lauren Young, Sean M Sykes

Nat Genet· September 2012

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A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries.
Sheila Fisher, Andrew Barry, Justin Abreu, Brian Minie, Jillian Nolan, Sean M Sykes

Genome Biol· February 2012

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Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.
Yonatan H Grad, Marc Lipsitch, Michael Feldgarden, Harindra M Arachchi, Gustavo C Cerqueira, Sean Sykes

Proc Natl Acad Sci U S A· February 2012

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Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
Christopher A Desjardins, Mia D Champion, Jason W Holder, Anna Muszewska, Jonathan Goldberg, Sean M Sykes

PLoS Genet· October 2011

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Comparative functional genomics of the fission yeasts.
Nicholas Rhind, Zehua Chen, Moran Yassour, Dawn A Thompson, Brian J Haas, Sean M Sykes

Science· May 2011

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
Sante Gnerre, Iain Maccallum, Dariusz Przybylski, Filipe J Ribeiro, Joshua N Burton, Sean Sykes

Proc Natl Acad Sci U S A· January 2011

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Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control.
Daniel E Neafsey, Bridget M Barker, Thomas J Sharpton, Jason E Stajich, Daniel J Park, Sean Sykes

Genome Res· July 2010

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A catalog of reference genomes from the human microbiome.

Science· May 2010

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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
Li-Jun Ma, H Charlotte van der Does, Katherine A Borkovich, Jeffrey J Coleman, Marie-Josée Daboussi, Sean Sykes

Nature· March 2010

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.
Brian J Haas, Sophien Kamoun, Michael C Zody, Rays H Y Jiang, Robert E Handsaker, Sean Sykes

Nature· September 2009

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Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Sean Sykes

Nature· December 2005

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Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b.
Zhenping Zhong, Ron Caspi, Donald Helinski, Vic Knauf, Sean Sykes

Plasmid· May 2003

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