Publications by authors named "Seth Commichaux"

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DNA data (genome skims and metabarcodes) paired with chemical data demonstrate utility for retrospective analysis of forage linked to fatal poisoning of cattle.
Daniel Cook, Brandon Kocurek, Clint Stonecipher, Kevin D Welch, Dale R Gardner, Seth Commichaux

Toxicon· March 2025

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Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes.
Seth Commichaux, Tu Luan, Harihara Subrahmaniam Muralidharan, Mihai Pop

PLoS Comput Biol· August 2024

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Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates.
Tu Luan, Seth Commichaux, Maria Hoffmann, Victor Jayeola, Jae Hee Jang

BMC Genomics· July 2024

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Genetic relatedness and virulence potential of Schwarzengrund strains with or without an IncFIB-IncFIC(FII) fusion plasmid isolated from food and clinical sources.
Monique A Felix, Danielle Sopovski, Seth Commichaux, Noah Yoskowitz, Nesreen H Aljahdali

Front Microbiol· May 2024

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Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble.
Andrea Ottesen, Brandon Kocurek, Elizabeth Reed, Seth Commichaux, Mark Mammel

Front Vet Sci· April 2024

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Complete genome sequences of 17 serovar Schwarzengrund isolates carrying an IncFIB-IncFIC (FII) fusion plasmid.
Danielle Sopovski, Seth Commichaux, Shaohua Zhao, Christopher J Grim, Steven L Foley

Microbiol Resour Announc· February 2024

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Fecal microbiomes of laboratory beagles receiving antiparasitic formulations in an experimental setting.
Andrea Ottesen, Brandon Kocurek, Christine Deaver, Oscar Chiesa, Rachael Cohen, Seth Commichaux

Microbiol Resour Announc· January 2024

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Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes.
Seth Commichaux, Tu Luan, Harihara Subrahmaniam Muralidharan, Mihai Pop

bioRxiv· December 2023

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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation.
Seth Commichaux, Hugh Rand, Kiran Javkar, Erin K Molloy, James B Pettengill

BMC Genomics· April 2023

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A critical assessment of gene catalogs for metagenomic analysis.
Seth Commichaux, Nidhi Shah, Jay Ghurye, Alexander Stoppel, Jessica A Goodheart

Bioinformatics· September 2021

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Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads.
Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand

BMC Genomics· May 2021

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Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth.
Elizabeth Reed, Robert Sanderson, Barbara Sanderson, Padmini Ramachandran, Seth Commichaux

Microbiol Resour Announc· January 2021

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Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019.
Eric Sakowski, Gherman Uritskiy, Rachel Cooper, Maya Gomes, Michael R McLaren, Seth Commichaux

mSystems· October 2019

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Microbiota of the Hickey Run Tributary of the Anacostia River.
Robin Cagle, Padmini Ramachandran, Elizabeth Reed, Seth Commichaux, Mark K Mammel

Microbiol Resour Announc· March 2019

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Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates.
Padmini Ramachandran, Elizabeth Reed, Seth Commichaux, Errol Strain, Angelo Depaola

Genome Announc· June 2018

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