Publications by authors named "Shaun Jackman"

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The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Tal J Shalev, Omnia Gamal El-Dien, Macaire M S Yuen, Shu Shengqiang, Shaun D Jackman

Genome Res· October 2022

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A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin, Shaun Jackman

Nat Biotechnol· November 2020

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Author Correction: A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin, Shaun Jackman

Nat Biotechnol· November 2020

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Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure.
Shaun D Jackman, Lauren Coombe, René L Warren, Heather Kirk, Eva Trinh

Genome Biol Evol· July 2020

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ORCA: a comprehensive bioinformatics container environment for education and research.
Shaun D Jackman, Tatyana Mozgacheva, Susie Chen, Brendan O'Huiginn, Lance Bailey

Bioinformatics· November 2019

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Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.
Diana Lin, Lauren Coombe, Shaun D Jackman, Kristina K Gagalova, René L Warren

Microbiol Resour Announc· June 2019

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Complete Chloroplast Genome Sequence of an Engelmann Spruce (, Genotype Se404-851) from Western Canada.
Diana Lin, Lauren Coombe, Shaun D Jackman, Kristina K Gagalova, René L Warren

Microbiol Resour Announc· June 2019

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The Genome of the Steller Sea Lion ().
Harwood H Kwan, Luka Culibrk, Gregory A Taylor, Sreeja Leelakumari, Ryan Tan, Shaun D Jackman

Genes (Basel)· June 2019

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The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.
Gregory A Taylor, Heather Kirk, Lauren Coombe, Shaun D Jackman, Justin Chu

Genes (Basel)· November 2018

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Tigmint: correcting assembly errors using linked reads from large molecules.
Shaun D Jackman, Lauren Coombe, Justin Chu, Rene L Warren, Benjamin P Vandervalk

BMC Bioinformatics· October 2018

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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Lauren Coombe, Jessica Zhang, Benjamin P Vandervalk, Justin Chu, Shaun D Jackman

BMC Bioinformatics· June 2018

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Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.
Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk

PLoS One· August 2017

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ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
Shaun D Jackman, Benjamin P Vandervalk, Hamid Mohamadi, Justin Chu, Sarah Yeo

Genome Res· May 2017

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Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Benjamin P Vandervalk, Chen Yang, Zhuyi Xue, Karthika Raghavan, Justin Chu, Shaun D Jackman

BMC Med Genomics· July 2016

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Kleat: cleavage site analysis of transcriptomes.
Inanç Birol, Anthony Raymond, Readman Chiu, Ka Ming Nip, Shaun D Jackman

Pac Symp Biocomput· April 2016

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DIDA: Distributed Indexing Dispatched Alignment.
Hamid Mohamadi, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman, Justin Chu

PLoS One· April 2016

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UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.
Shaun D Jackman, Joerg Bohlmann, İnanç Birol

PLoS One· April 2016

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Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.
Shaun D Jackman, René L Warren, Ewan A Gibb, Benjamin P Vandervalk, Hamid Mohamadi

Genome Biol Evol· December 2015

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Spaced Seed Data Structures for De Novo Assembly.
Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D Jackman, Karthika Raghavan

Int J Genomics· November 2015

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Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.
René L Warren, Christopher I Keeling, Macaire Man Saint Yuen, Anthony Raymond, Greg A Taylor, Shaun D Jackman

Plant J· July 2015

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Sealer: a scalable gap-closing application for finishing draft genomes.
Daniel Paulino, René L Warren, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman

BMC Bioinformatics· July 2015

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On the representation of de Bruijn graphs.
Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T Simpson, Paul Medvedev

J Comput Biol· May 2015

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BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D Jackman, Ka Ming Nip

Bioinformatics· December 2014

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Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.
Metka Lenassi, Cene Gostinčar, Shaun Jackman, Martina Turk, Ivan Sadowski

PLoS One· April 2014

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Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Lucas Swanson, Gordon Robertson, Karen L Mungall, Yaron S Butterfield, Readman Chiu, Shaun D Jackman

BMC Genomics· August 2013

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