Publications by authors named "Shoshana D Brown"

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Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer.
Brenda P Medellin, Emily B Lancaster, Shoshana D Brown, Swanand Rakhade, Patricia C Babbitt

Biochemistry· April 2020

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A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function.
Gemma L Holliday, Shoshana D Brown, David Mischel, Benjamin J Polacco, Patricia C Babbitt

Database (Oxford)· January 2020

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Structural, Kinetic, and Mechanistic Analysis of an Asymmetric 4-Oxalocrotonate Tautomerase Trimer.
Bert-Jan Baas, Brenda P Medellin, Jake A LeVieux, Marieke de Ruijter, Yan Jessie Zhang, Shoshana D Brown

Biochemistry· June 2019

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Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.
Gemma L Holliday, Eyal Akiva, Elaine C Meng, Shoshana D Brown, Sara Calhoun

Methods Enzymol· May 2019

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InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Alex L Mitchell, Teresa K Attwood, Patricia C Babbitt, Matthias Blum, Peer Bork, Shoshana D Brown

Nucleic Acids Res· January 2019

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An approach to functionally relevant clustering of the protein universe: Active site profile-based clustering of protein structures and sequences.
Stacy T Knutson, Brian M Westwood, Janelle B Leuthaeuser, Brandon E Turner, Don Nguyendac, Shoshana D Brown

Protein Sci· April 2017

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Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Gemma L Holliday, Shoshana D Brown, Eyal Akiva, David Mischel, Michael A Hicks

Database (Oxford)· January 2017

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Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Gemma L Holliday, Shoshana D Brown, Eyal Akiva, David Mischel, Michael A Hicks

Database (Oxford)· January 2017

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Molecular Diversity of Terpene Synthases in the Liverwort Marchantia polymorpha.
Santosh Kumar, Chase Kempinski, Xun Zhuang, Ayla Norris, Sibongile Mafu, Shoshana D Brown

Plant Cell· October 2016

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Covalent docking predicts substrates for haloalkanoate dehalogenase superfamily phosphatases.
Nir London, Jeremiah D Farelli, Shoshana D Brown, Chunliang Liu, Hua Huang

Biochemistry· January 2015

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New insights about enzyme evolution from large scale studies of sequence and structure relationships.
Shoshana D Brown, Patricia C Babbitt

J Biol Chem· October 2014

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Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily.
Tiit Lukk, Ayano Sakai, Chakrapani Kalyanaraman, Shoshana D Brown, Heidi J Imker

Proc Natl Acad Sci U S A· March 2012

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Inference of functional properties from large-scale analysis of enzyme superfamilies.
Shoshana D Brown, Patricia C Babbitt

J Biol Chem· January 2012

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Annotation error in public databases: misannotation of molecular function in enzyme superfamilies.
Alexandra M Schnoes, Shoshana D Brown, Igor Dodevski, Patricia C Babbitt

PLoS Comput Biol· December 2009

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Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.
Ursula Pieper, Ranyee Chiang, Jennifer J Seffernick, Shoshana D Brown, Margaret E Glasner

J Struct Funct Genomics· April 2009

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Kinetics of the deprotonation of methylnitroacetate by amines: unusually high intrinsic rate constants for a nitroalkane.
Claude F Bernasconi, Moisés Pérez-Lorenzo, Shoshana D Brown

J Org Chem· June 2007

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Spectroscopic and kinetic evidence for an accumulating intermediate in an SNV reaction with amine nucleophiles. Reaction of methyl beta-methylthio-alpha-nitrocinnamate with piperidine and morpholine.
Claude F Bernasconi, Shoshana D Brown, Irina Eventova, Zvi Rappoport

J Org Chem· April 2007

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A gold standard set of mechanistically diverse enzyme superfamilies.
Shoshana D Brown, John A Gerlt, Jennifer L Seffernick, Patricia C Babbitt

Genome Biol· August 2006

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Hydrolysis of alpha-alkyl-alpha-(methylthio)methylene Meldrum's acids. A kinetic and computational investigation of steric effects.
Claude F Bernasconi, Shoshana D Brown, Mahammad Ali, Zvi Rappoport, Hiroshi Yamataka

J Org Chem· June 2006

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Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database.
Scott C-H Pegg, Shoshana D Brown, Sunil Ojha, Jennifer Seffernick, Elaine C Meng

Biochemistry· February 2006

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Acid-Catalyzed Breakdown of Alkoxide and Thiolate Ion Adducts of Benzylidene Meldrum's Acid, Methoxybenzylidene Meldrum's Acid and Thiomethoxybenzylidene Meldrum's Acid.
Claude F. Bernasconi, Rodney J. Ketner, Shoshana D. Brown, Xin Chen, Zvi Rappoport

J Org Chem· November 1999

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