Publications by authors named "Ursula Pieper"

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Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.
Gemma L Holliday, Eyal Akiva, Elaine C Meng, Shoshana D Brown, Sara Calhoun, Ursula Pieper

Methods Enzymol· May 2019

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Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes.
Jeffrey R Johnson, Silvia D Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo

PLoS Comput Biol· August 2015

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Target prediction for an open access set of compounds active against Mycobacterium tuberculosis.
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M Wallace, Vinod Kumar, Ursula Pieper

PLoS Comput Biol· May 2014

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ModBase, a database of annotated comparative protein structure models and associated resources.
Ursula Pieper, Benjamin M Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan

Nucleic Acids Res· January 2014

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A role for matrix metalloproteinases in regulating mammary stem cell function via the Wnt signaling pathway.
Kai Kessenbrock, Gerrit J P Dijkgraaf, Devon A Lawson, Laurie E Littlepage, Payam Shahi, Ursula Pieper

Cell Stem Cell· September 2013

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Consequences of domain insertion on sequence-structure divergence in a superfold.
Chetanya Pandya, Shoshana Brown, Ursula Pieper, Andrej Sali, Debra Dunaway-Mariano

Proc Natl Acad Sci U S A· September 2013

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Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex.
Parthasarathy Sampathkumar, Seung Joong Kim, Paula Upla, William J Rice, Jeremy Phillips, Ursula Pieper

Structure· April 2013

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Coordinating the impact of structural genomics on the human α-helical transmembrane proteome.
Ursula Pieper, Avner Schlessinger, Edda Kloppmann, Geoffrey A Chang, James J Chou

Nat Struct Mol Biol· February 2013

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Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.
Parthasarathy Sampathkumar, Seung Joong Kim, Danalyn Manglicmot, Kevin T Bain, Jeremiah Gilmore, Ursula Pieper

Proteins· August 2012

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SALIGN: a web server for alignment of multiple protein sequences and structures.
Hannes Braberg, Benjamin M Webb, Elina Tjioe, Ursula Pieper, Andrej Sali

Bioinformatics· August 2012

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Facile backbone structure determination of human membrane proteins by NMR spectroscopy.
Christian Klammt, Innokentiy Maslennikov, Monika Bayrhuber, Cédric Eichmann, Navratna Vajpai, Ursula Pieper

Nat Methods· May 2012

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Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type protein.
Vida Puizdar, Tajana Zajc, Eva Zerovnik, Miha Renko, Ursula Pieper

Biol Chem· March 2012

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A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae.
Svetlana Dokudovskaya, Francois Waharte, Avner Schlessinger, Ursula Pieper, Damien P Devos

Mol Cell Proteomics· June 2011

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Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.
Parthasarathy Sampathkumar, Tarun Gheyi, Stacy A Miller, Kevin T Bain, Mark Dickey, Ursula Pieper

Proteins· May 2011

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ModBase, a database of annotated comparative protein structure models, and associated resources.
Ursula Pieper, Benjamin M Webb, David T Barkan, Dina Schneidman-Duhovny, Avner Schlessinger

Nucleic Acids Res· January 2011

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Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.
Parthasarathy Sampathkumar, Frances Lu, Xun Zhao, Zhenzhen Li, Jeremiah Gilmore, Ursula Pieper

Proteins· November 2010

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Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.
Libusha Kelly, Hisayo Fukushima, Rachel Karchin, Jason M Gow, Leslie W Chinn, Ursula Pieper

Protein Sci· November 2010

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Prediction of protease substrates using sequence and structure features.
David T Barkan, Daniel R Hostetter, Sami Mahrus, Ursula Pieper, James A Wells

Bioinformatics· July 2010

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Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.
Parthasarathy Sampathkumar, Sinem A Ozyurt, Johnny Do, Kevin T Bain, Mark Dickey, Ursula Pieper

Proteins· June 2010

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Comparison of human solute carriers.
Avner Schlessinger, Pär Matsson, James E Shima, Ursula Pieper, Sook Wah Yee

Protein Sci· March 2010

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A kernel for open source drug discovery in tropical diseases.
Leticia Ortí, Rodrigo J Carbajo, Ursula Pieper, Narayanan Eswar, Stephen M Maurer

PLoS Negl Trop Dis· February 2010

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A survey of integral alpha-helical membrane proteins.
Libusha Kelly, Ursula Pieper, Narayanan Eswar, Franklin A Hays, Min Li

J Struct Funct Genomics· December 2009

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Carbanion or amide? First charge density study of parent 2-picolyllithium.
Holger Ott, Ursula Pieper, Dirk Leusser, Ulrike Flierler, Julian Henn

Angew Chem Int Ed Engl· June 2009

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The ergonomic relevance of anthropometrical proportions. Part I: body length measures.
Gerd Küchmeister, Kay Behrenbruch, Pieper Ursula, Dieter Leyk

J Physiol Anthropol· June 2009

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A kernel for the Tropical Disease Initiative.
Leticia Ortí, Rodrigo J Carbajo, Ursula Pieper, Narayanan Eswar, Stephen M Maurer

Nat Biotechnol· April 2009

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