Publications by authors named "Simon Fredriksson"

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Using adjusted local assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance.
Jan Rhomberg-Kauert, Max Karlsson, Divya Thiagarajan, Tomasz Kallas, Filip Karlsson, Simon Fredriksson

Front Immunol· July 2024

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Molecular pixelation: spatial proteomics of single cells by sequencing.
Filip Karlsson, Tomasz Kallas, Divya Thiagarajan, Max Karlsson, Maud Schweitzer, Simon Fredriksson

Nat Methods· June 2024

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Gel-Based Proteomics of Clinical Samples Identifies Potential Serological Biomarkers for Early Detection of Colorectal Cancer.
Stine F Thorsen, Irina Gromova, Ib J Christensen, Simon Fredriksson, Claus L Andersen

Int J Mol Sci· December 2019

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Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction.
Alex S Genshaft, Shuqiang Li, Caroline J Gallant, Spyros Darmanis, Sanjay M Prakadan, Simon Fredriksson

Genome Biol· September 2016

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New technologies for DNA analysis--a review of the READNA Project.
Steven McGinn, David Bauer, Thomas Brefort, Liqin Dong, Afaf El-Sagheer, Simon Fredriksson

N Biotechnol· May 2016

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Simultaneous Multiplexed Measurement of RNA and Proteins in Single Cells.
Spyros Darmanis, Caroline Julie Gallant, Voichita Dana Marinescu, Mia Niklasson, Anna Segerman, Simon Fredriksson

Cell Rep· January 2016

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A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers.
Sadia Mahboob, Seong Beom Ahn, Harish R Cheruku, David Cantor, Emma Rennel, Simon Fredriksson

Clin Proteomics· May 2015

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Homogenous 96-plex PEA immunoassay exhibiting high sensitivity, specificity, and excellent scalability.
Erika Assarsson, Martin Lundberg, Göran Holmquist, Johan Björkesten, Stine Bucht Thorsen, Simon Fredriksson

PLoS One· January 2015

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Improving precision of proximity ligation assay by amplified single molecule detection.
Rongqin Ke, Rachel Yuan Nong, Simon Fredriksson, Ulf Landegren, Mats Nilsson

PLoS One· February 2014

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Plasma levels of the MMP-9:TIMP-1 complex as prognostic biomarker in breast cancer: a retrospective study.
Stine B Thorsen, Sarah Lt Christensen, Sidse O Würtz, Martin Lundberg, Birgitte S Nielsen, Simon Fredriksson

BMC Cancer· December 2013

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Detection of serological biomarkers by proximity extension assay for detection of colorectal neoplasias in symptomatic individuals.
Stine Buch Thorsen, Martin Lundberg, Andrea Villablanca, Sarah Louise T Christensen, Kirstine Christensen Belling, Simon Fredriksson

J Transl Med· October 2013

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ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing.
Spyros Darmanis, Rachel Yuan Nong, Johan Vänelid, Agneta Siegbahn, Olle Ericsson, Simon Fredriksson

PLoS One· January 2012

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Homogeneous antibody-based proximity extension assays provide sensitive and specific detection of low-abundant proteins in human blood.
Martin Lundberg, Anna Eriksson, Bonnie Tran, Erika Assarsson, Simon Fredriksson

Nucleic Acids Res· August 2011

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Multiplexed homogeneous proximity ligation assays for high-throughput protein biomarker research in serological material.
Martin Lundberg, Stine Buch Thorsen, Erika Assarsson, Andrea Villablanca, Bonnie Tran, Simon Fredriksson

Mol Cell Proteomics· April 2011

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Padlock and proximity probes for in situ and array-based analyses: tools for the post-genomic era.
Ulf Landegren, Fredrik Dahl, Mats Nilsson, Simon Fredriksson, Johan Banér

Comp Funct Genomics· June 2010

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Use of proximity ligation to screen for inhibitors of interactions between vascular endothelial growth factor A and its receptors.
Sigrun M Gustafsdottir, Stefan Wennström, Simon Fredriksson, Edith Schallmeiner, Andrew D Hamilton

Clin Chem· July 2008

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Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.
Simon Fredriksson, Joe Horecka, Odd Terje Brustugun, Joerg Schlingemann, Albert C Koong

Clin Chem· March 2008

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Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.
Simon Fredriksson, Johan Banér, Fredrik Dahl, Angela Chu, Hanlee Ji

Nucleic Acids Res· June 2007

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Multigene amplification and massively parallel sequencing for cancer mutation discovery.
Fredrik Dahl, Johan Stenberg, Simon Fredriksson, Katrina Welch, Michael Zhang

Proc Natl Acad Sci U S A· May 2007

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Multiplexed protein detection by proximity ligation for cancer biomarker validation.
Simon Fredriksson, William Dixon, Hanlee Ji, Albert C Koong, Michael Mindrinos

Nat Methods· April 2007

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Digital quantification using amplified single-molecule detection.
Jonas Jarvius, Jonas Melin, Jenny Göransson, Johan Stenberg, Simon Fredriksson

Nat Methods· September 2006

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Detection of individual microbial pathogens by proximity ligation.
Sigrun M Gustafsdottir, Ann Nordengrahn, Simon Fredriksson, Per Wallgren, Esteban Rivera

Clin Chem· June 2006

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A sensitive proximity ligation assay for active PSA.
Lei Zhu, Hannu Koistinen, Ping Wu, Ale Närvänen, Edith Schallmeiner, Simon Fredriksson

Biol Chem· June 2006

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Proximity ligation assays for sensitive and specific protein analyses.
Sigrun M Gustafsdottir, Edith Schallmeiner, Simon Fredriksson, Mats Gullberg, Ola Söderberg

Anal Biochem· October 2005

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Cytokine detection by antibody-based proximity ligation.
Mats Gullberg, Sigrún M Gústafsdóttir, Edith Schallmeiner, Jonas Jarvius, Mattias Bjarnegård, Simon Fredriksson

Proc Natl Acad Sci U S A· June 2004

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