Publications by authors named "Stephan Preibisch"

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Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs.
Natalia Dos Santos, Aline Aquino, Friedrich Preußer, Fabio Rojas Rusak, Elisa Helena Farias Jandrey, Stephan Preibisch

Cancers (Basel)· November 2025

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Sexual dimorphism in the complete connectome of the male central nervous system.
Stuart Berg, Isabella R Beckett, Marta Costa, Philipp Schlegel, Michał Januszewski, Stephan Preibisch

bioRxiv· October 2025

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PEELing: an integrated and user-centric platform for spatially resolved proteomics data analysis.
Xi Peng, Jody Clements, Zuzhi Jiang, Shuo Han, Stephan Preibisch

Bioinformatics· August 2025

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Connectome-driven neural inventory of a complete visual system.
Aljoscha Nern, Frank Loesche, Shin-Ya Takemura, Laura E Burnett, Marisa Dreher, Stephan Preibisch

Nature· May 2025

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Scalable image-based visualization and alignment of spatial transcriptomics datasets.
Stephan Preibisch, Michael Innerberger, Daniel León-Periñán, Nikos Karaiskos, Nikolaus Rajewsky

Cell Syst· May 2025

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Deep-tissue transcriptomics and subcellular imaging at high spatial resolution.
Valentina Gandin, Jun Kim, Liang-Zhong Yang, Yumin Lian, Takashi Kawase, Stephan Preibisch

Science· April 2025

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Visualizing sarcomere and cellular dynamics in skeletal muscle to improve cell therapies.
Judith Hüttemeister, Franziska Rudolph, Michael H Radke, Claudia Fink, Dhana Friedrich, Stephan Preibisch

Elife· December 2024

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Connectome-driven neural inventory of a complete visual system.
Aljoscha Nern, Frank Loesche, Shin-Ya Takemura, Laura E Burnett, Marisa Dreher, Stephan Preibisch

bioRxiv· June 2024

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Analysis of developmental gene expression using smFISH and staging of embryos.
Laura Breimann, Ella Bahry, Marwan Zouinkhi, Klim Kolyvanov, Lena Annika Street, Stephan Preibisch

bioRxiv· May 2024

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Author Correction: Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Navaneetha Krishnan Bharathan, William Giang, Coryn L Hoffman, Jesse S Aaron, Satya Khuon, Stephan Preibisch

Nat Cell Biol· April 2024

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Stephan Preibisch

Histochem Cell Biol· September 2023

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Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Navaneetha Krishnan Bharathan, William Giang, Coryn L Hoffman, Jesse S Aaron, Satya Khuon, Stephan Preibisch

Nat Cell Biol· June 2023

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A scalable implementation of the recursive least-squares algorithm for training spiking neural networks.
Benjamin J Arthur, Christopher M Kim, Susu Chen, Stephan Preibisch, Ran Darshan

Front Neuroinform· June 2023

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Stephan Preibisch

bioRxiv· May 2023

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Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.
Caroline Malin-Mayor, Peter Hirsch, Leo Guignard, Katie McDole, Yinan Wan, Stephan Preibisch

Nat Biotechnol· January 2023

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RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Ella Bahry, Laura Breimann, Marwan Zouinkhi, Leo Epstein, Klim Kolyvanov, Stephan Preibisch

Nat Methods· December 2022

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Long-term imaging reveals behavioral plasticity during C. elegans dauer exit.
Friedrich Preusser, Anika Neuschulz, Jan Philipp Junker, Nikolaus Rajewsky, Stephan Preibisch

BMC Biol· December 2022

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Cap-dependent translation initiation monitored in living cells.
Valentina Gandin, Brian P English, Melanie Freeman, Louis-Philippe Leroux, Stephan Preibisch

Nat Commun· November 2022

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Best practice standards for circular RNA research.
Anne F Nielsen, Albrecht Bindereif, Irene Bozzoni, Mor Hanan, Thomas B Hansen, Stephan Preibisch

Nat Methods· October 2022

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The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.
Laura Breimann, Ana Karina Morao, Jun Kim, David Sebastian Jimenez, Nina Maryn, Stephan Preibisch

J Cell Sci· January 2022

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FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.
Friedrich Preusser, Natália Dos Santos, Jörg Contzen, Harald Stachelscheid, Érico Tosoni Costa, Stephan Preibisch

Bioinformatics· September 2021

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Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror.
Nikita Vladimirov, Friedrich Preusser, Jan Wisniewski, Ziv Yaniv, Ravi Anand Desai, Stephan Preibisch

Biomed Opt Express· April 2021

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Regulatory encoding of quantitative variation in spatial activity of a enhancer.
Yann Le Poul, Yaqun Xin, Liucong Ling, Bettina Mühling, Rita Jaenichen, Stephan Preibisch

Sci Adv· December 2020

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Resolving titin's lifecycle and the spatial organization of protein turnover in mouse cardiomyocytes.
Franziska Rudolph, Judith Hüttemeister, Katharina da Silva Lopes, René Jüttner, Lily Yu, Stephan Preibisch

Proc Natl Acad Sci U S A· December 2019

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Stochastic transcription in the p53-mediated response to DNA damage is modulated by burst frequency.
Dhana Friedrich, Laura Friedel, Ana Finzel, Andreas Herrmann, Stephan Preibisch

Mol Syst Biol· December 2019

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