Publications by authors named "Stephen Mount"

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Fair molecular feature selection unveils universally tumor lineage-informative methylation sites in colorectal cancer.
Xuan Cindy Li, Yuelin Liu, Alejandro A Schäffer, Stephen M Mount, S Cenk Sahinalp

Bioinformatics· July 2025

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Predicting the impact of rare variants on RNA splicing in CAGI6.
Jenny Lord, Carolina Jaramillo Oquendo, Htoo A Wai, Andrew G L Douglas, David J Bunyan, Stephen M Mount

Hum Genet· March 2025

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Latent Dirichlet allocation mixture models for nucleotide sequence analysis.
Bixuan Wang, Stephen M Mount

NAR Genom Bioinform· September 2024

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Progerin mRNA expression in non-HGPS patients is correlated with widespread shifts in transcript isoforms.
Reynold Yu, Huijing Xue, Wanru Lin, Francis S Collins, Stephen M Mount

NAR Genom Bioinform· September 2024

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REAL-TIME VISUALIZATION OF SPLICEOSOME ASSEMBLY REVEALS BASIC PRINCIPLES OF SPLICE SITE SELECTION.
Benjamin T Donovan, Bixuan Wang, Gloria R Garcia, Stephen M Mount, Daniel R Larson

bioRxiv· July 2024

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Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia.
Manoj Kumar Kashyap, Hiren Karathia, Deepak Kumar, Roberto Vera Alvarez, Jose Vicente Forero-Forero, Stephen M Mount

Mol Ther Nucleic Acids· June 2024

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scCensus: Off-target scRNA-seq reads reveal meaningful biology.
Dongze He, Stephen M Mount, Rob Patro

bioRxiv· January 2024

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Rosaceae fruit transcriptome database (ROFT)-a useful genomic resource for comparing fruits of apple, peach, strawberry, and raspberry.
Muzi Li, Stephen M Mount, Zhongchi Liu

Hortic Res· December 2023

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Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification.
Junhui Zhou, Muzi Li, Yongping Li, Yuwei Xiao, Xi Luo, Stephen M Mount

Plant Physiol· September 2023

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Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models.
Yuelin Liu, Xuan Cindy Li, Farid Rashidi Mehrabadi, Alejandro A Schäffer, Drew Pratt, Stephen M Mount

Genome Res· July 2023

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Analyses of Marsilea vestita genome and transcriptomes do not support widespread intron retention during spermatogenesis.
Nasim Rahmatpour, Li-Yaung Kuo, Jessica Kang, Eliana Herman, Lily Lei, Stephen Mount

New Phytol· March 2023

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Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues.
David R Crawford, Sanju Sinha, Nishanth Ulhas Nair, Bríd M Ryan, Jill S Barnholtz-Sloan, Stephen M Mount

Cancers (Basel)· November 2022

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Comparative transcriptomic analysis of apple and peach fruits: insights into fruit type specification.
Muzi Li, Kelsey Galimba, Yuwei Xiao, Chris Dardick, Stephen M Mount

Plant J· March 2022

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Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems.
Yingxiao Zhang, Qiurong Ren, Xu Tang, Shishi Liu, Aimee A Malzahn, Stephen M Mount

Nat Commun· March 2021

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Expanding plant genome-editing scope by an engineered iSpyMacCas9 system that targets A-rich PAM sequences.
Simon Sretenovic, Desuo Yin, Adam Levav, Jeremy D Selengut, Stephen M Mount

Plant Commun· March 2021

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Assessing predictions of the impact of variants on splicing in CAGI5.
Stephen M Mount, Žiga Avsec, Liran Carmel, Rita Casadio, Muhammed Hasan Çelik

Hum Mutat· September 2019

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Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis.
Mohamed K Gunady, Stephen M Mount, Héctor Corrada Bravo

BMC Bioinformatics· August 2019

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Application of the subsequent injury categorisation model for longitudinal injury surveillance in elite rugby and cricket: intersport comparisons and inter-rater reliability of coding.
Isabel S Moore, Stephen Mount, Prabhat Mathema, Craig Ranson

Br J Sports Med· September 2018

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Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry.
Rachel Shahan, Christopher Zawora, Haley Wight, John Sittmann, Wanpeng Wang, Stephen M Mount

Plant Physiol· September 2018

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The Splicing Factor Mediates the Cellular Immune Response in .
Ashley E Nazario-Toole, Javier Robalino, Kwame Okrah, Hector Corrada-Bravo, Stephen M Mount

J Immunol· August 2018

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Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana.
Xiao-Ning Zhang, Yifei Shi, Jordan J Powers, Nikhil B Gowda, Chong Zhang, Stephen M Mount

BMC Genomics· October 2017

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International consensus statement on injury surveillance in cricket: a 2016 update.
John W Orchard, Craig Ranson, Benita Olivier, Mandeep Dhillon, Janine Gray, Stephen Mount

Br J Sports Med· October 2016

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A Genealogical Look at Shared Ancestry on the X Chromosome.
Vince Buffalo, Stephen M Mount, Graham Coop

Genetics· September 2016

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Recognizing the 35th anniversary of the proposal that snRNPs are involved in splicing.
Stephen M Mount, Sandra L Wolin

Mol Biol Cell· October 2015

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Erratum to: Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
Theodore R Gibbons, Stephen M Mount, Endymion D Cooper, Charles F Delwiche

BMC Bioinformatics· August 2015

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