Publications by authors named "Steven Wiley"

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A Roadmap for the Future of Systems Biology in Cancer Research.
H Steven Wiley, Carlos F Lopez, Andrei S Rodin, Russell C Rockne, Thomas E Yankeelov

Cancer Res· December 2025

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Generating synthetic signaling networks for in silico modeling studies.
Jin Xu, H Steven Wiley, Herbert M Sauro

J Theor Biol· October 2024

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Signal integration and integral feedback control with biochemical reaction networks.
Steven S Andrews, Michael Kochen, Lucian Smith, Song Feng, H Steven Wiley

bioRxiv· April 2024

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Design Patterns of Biological Cells.
Steven S Andrews, H Steven Wiley, Herbert M Sauro

ArXiv· October 2023

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A Phosphoproteomics Data Resource for Systems-level Modeling of Kinase Signaling Networks.
Song Feng, James A Sanford, Thomas Weber, Chelsea M Hutchinson-Bunch, Panshak P Dakup, H Steven Wiley

bioRxiv· August 2023

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Addressing the genetic/nongenetic duality in cancer with systems biology.
Prakash Kulkarni, H Steven Wiley, Herbert Levine, Herbert Sauro, Alexander Anderson

Trends Cancer· March 2023

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Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways.
Panshak P Dakup, Song Feng, Tujin Shi, Jon M Jacobs, H Steven Wiley

Molecules· January 2023

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SBbadger: biochemical reaction networks with definable degree distributions.
Michael A Kochen, H Steven Wiley, Song Feng, Herbert M Sauro

Bioinformatics· November 2022

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Dynamics and Sensitivity of Signaling Pathways.
Michael A Kochen, Steven S Andrews, H Steven Wiley, Song Feng, Herbert M Sauro

Curr Pathobiol Rep· June 2022

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Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.
Kendall Martin, Tong Zhang, Tai-Tu Lin, Amber N Habowski, Rui Zhao, H Steven Wiley

J Proteome Res· September 2021

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Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.
Chia-Feng Tsai, Pengfei Zhang, David Scholten, Kendall Martin, Yi-Ting Wang, H Steven Wiley

Commun Biol· March 2021

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Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells.
Luca Gerosa, Christopher Chidley, Fabian Fröhlich, Gabriela Sanchez, Sang Kyun Lim, H Steven Wiley

Cell Syst· November 2020

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Publisher Correction: Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt.
Amber N Habowski, Jessica L Flesher, Jennifer M Bates, Chia-Feng Tsai, Kendall Martin, H Steven Wiley

Commun Biol· September 2020

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Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt.
Amber N Habowski, Jessica L Flesher, Jennifer M Bates, Chia-Feng Tsai, Kendall Martin, H Steven Wiley

Commun Biol· August 2020

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Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.
Pengfei Zhang, Matthew J Gaffrey, Ying Zhu, William B Chrisler, Thomas L Fillmore, H Steven Wiley

Anal Chem· January 2019

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A systems perspective of heterocellular signaling.
Alan Wells, H Steven Wiley

Essays Biochem· October 2018

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A combination of TLR-4 agonist and saponin adjuvants increases antibody diversity and protective efficacy of a recombinant West Nile Virus antigen.
Neal Van Hoeven, Steven Wiley, Emily Gage, Andrew Fiore-Gartland, Brian Granger

NPJ Vaccines· September 2018

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Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells.
Tujin Shi, Matthew J Gaffrey, Thomas L Fillmore, Carrie D Nicora, Lian Yi, H Steven Wiley

Commun Biol· August 2018

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Blazing Signature Filter: a library for fast pairwise similarity comparisons.
Joon-Yong Lee, Grant M Fujimoto, Ryan Wilson, H Steven Wiley, Samuel H Payne

BMC Bioinformatics· June 2018

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Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway.
Lian Yi, Tujin Shi, Marina A Gritsenko, Chi-Yuet X'avia Chan, Thomas L Fillmore, H Steven Wiley

Anal Chem· April 2018

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Molecular Methods and Bioinformatic Tools for Adjuvant Characterization by High-Throughput Sequencing.
Steven R Wiley, Vanitha S Raman

Methods Mol Biol· January 2018

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How low can you go?
H Steven Wiley

Elife· January 2018

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D
Decoding Signal Processing at the Single-Cell Level.
H Steven Wiley

Cell Syst· December 2017

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C
Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.
Tujin Shi, Mario Niepel, Jason E McDermott, Yuqian Gao, Carrie D Nicora, H Steven Wiley

Sci Signal· July 2016

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