Publications by authors named "Sumanta Ray"

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Correction: A graph neural network-based approach for predicting SARS-CoV-2-human protein interactions from multiview data.
Sumanta Ray, Syed Alberuni, Alexander Schönhuth

PLoS One· December 2025

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A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence data.
Gustaf Wigerblad, Jonathan Carruthers, Sumanta Ray, Thomas Finnie, Grant Lythe

Front Immunol· November 2025

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A graph neural network-based approach for predicting SARS-CoV-2-human protein interactions from multiview data.
Sumanta Ray, Syed Alberuni, Alexander Schönhuth

PLoS One· September 2025

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Enhancing Single-Cell RNA-Seq Data Completeness With a Graph Learning Framework.
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay

IEEE Trans Comput Biol Bioinform· August 2025

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A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence data.
Gustaf Wigerblad, Jonathan Carruthers, Sumanta Ray, Thomas Finnie, Grant Lythe

bioRxiv· July 2025

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Integration of biological data via NMF for identification of human disease-associated gene modules through multi-label classification.
Syed Alberuni, Sumanta Ray

PLoS One· December 2024

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Systematic mining of patterns of polysubstance use in a nationwide population survey.
Sumanta Ray, Meghana Desai, Saumyadipta Pyne

Comput Biol Med· December 2022

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Deep variational graph autoencoders for novel host-directed therapy options against COVID-19.
Sumanta Ray, Snehalika Lall, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Alexander Schönhuth

Artif Intell Med· December 2022

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LSH-GAN enables in-silico generation of cells for small sample high dimensional scRNA-seq data.
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay

Commun Biol· June 2022

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A Regularized Multi-Task Learning Approach for Cell Type Detection in Single-Cell RNA Sequencing Data.
Piu Upadhyay, Sumanta Ray

Front Genet· April 2022

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sc-REnF: An entropy guided robust feature selection for single-cell RNA-seq data.
Snehalika Lall, Abhik Ghosh, Sumanta Ray, Sanghamitra Bandyopadhyay

Brief Bioinform· March 2022

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A copula based topology preserving graph convolution network for clustering of single-cell RNA-seq data.
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay

PLoS Comput Biol· March 2022

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Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host Pathogen Interaction Network.
Sourav Biswas, Sumanta Ray, Sanghamitra Bandyopadhyay

IEEE/ACM Trans Comput Biol Bioinform· January 2022

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Pan-cancer classification by regularized multi-task learning.
Sk Md Mosaddek Hossain, Lutfunnesa Khatun, Sumanta Ray, Anirban Mukhopadhyay

Sci Rep· December 2021

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RgCop-A regularized copula based method for gene selection in single-cell RNA-seq data.
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay

PLoS Comput Biol· October 2021

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DTI-SNNFRA: Drug-target interaction prediction by shared nearest neighbors and fuzzy-rough approximation.
Sk Mazharul Islam, Sk Md Mosaddek Hossain, Sumanta Ray

PLoS One· August 2021

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Identification of key immune regulatory genes in HIV-1 progression.
Sk Md Mosaddek Hossain, Lutfunnesa Khatun, Sumanta Ray, Anirban Mukhopadhyay

Gene· August 2021

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Differential Patterns of Social Media Use Associated with Loneliness and Health Outcomes in Selected Socioeconomic Groups.
Pedram Gharani, Sumanta Ray, Meghana Aruru, Saumyadipta Pyne

J Technol Behav Sci· May 2021

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Discovering key transcriptomic regulators in pancreatic ductal adenocarcinoma using Dirichlet process Gaussian mixture model.
Sk Md Mosaddek Hossain, Aanzil Akram Halsana, Lutfunnesa Khatun, Sumanta Ray, Anirban Mukhopadhyay

Sci Rep· April 2021

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Clustering Patterns Connecting COVID-19 Dynamics and Human Mobility Using Optimal Transport.
Frank Nielsen, Gautier Marti, Sumanta Ray, Saumyadipta Pyne

Sankhya B (2008)· March 2021

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CODC: a Copula-based model to identify differential coexpression.
Sumanta Ray, Snehalika Lall, Sanghamitra Bandyopadhyay

NPJ Syst Biol Appl· June 2020

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A review of computational approaches for analysis of hepatitis C virus-mediated liver diseases.
Sumanta Ray, Ujjwal Maulik, Anirban Mukhopadhyay

Brief Funct Genomics· November 2018

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Computational Prediction of HCV-Human Protein-Protein Interaction via Topological Analysis of HCV Infected PPI Modules.
Sumanta Ray, Syed Alberuni, Ujjwal Maulik

IEEE Trans Nanobioscience· March 2018

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A comprehensive analysis on preservation patterns of gene co-expression networks during Alzheimer's disease progression.
Sumanta Ray, Sk Md Mosaddek Hossain, Lutfunnesa Khatun, Anirban Mukhopadhyay

BMC Bioinformatics· December 2017

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Identifying protein complexes in PPI network using non-cooperative sequential game.
Ujjwal Maulik, Srinka Basu, Sumanta Ray

Sci Rep· August 2017

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