Publications by authors named "Supratim Sengupta"

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Evolution of cooperation in multichannel games on multiplex networks.
Amit Basak, Supratim Sengupta

PLoS Comput Biol· December 2024

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The RNA-DNA world and the emergence of DNA-encoded heritable traits.
Suvam Roy, Supratim Sengupta

RNA Biol· January 2024

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The Effect of Environment on the Evolution and Proliferation of Protocells of Increasing Complexity.
Suvam Roy, Supratim Sengupta

Life (Basel)· August 2022

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Network rewiring promotes cooperation in an aspirational learning model.
Anuran Pal, Supratim Sengupta

Chaos· February 2022

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Evolution towards increasing complexity through functional diversification in a protocell model of the RNA world.
Suvam Roy, Supratim Sengupta

Proc Biol Sci· November 2021

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Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic earth.
Suvam Roy, Niraja V Bapat, Julien Derr, Sudha Rajamani, Supratim Sengupta

J Theor Biol· December 2020

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How strategy environment and wealth shape altruistic behaviour: cooperation rules affecting wealth distribution in dynamic networks.
Spandan Pathak, Prateek Verma, Sumit K Ram, Supratim Sengupta

Proc Biol Sci· December 2020

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RiboD: a comprehensive database for prokaryotic riboswitches.
Sumit Mukherjee, Sukhen Das Mandal, Nikita Gupta, Matan Drory-Retwitzer, Danny Barash, Supratim Sengupta

Bioinformatics· September 2019

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The evolution of antibiotic production rate in a spatial model of bacterial competition.
Jakub Kosakowski, Prateek Verma, Supratim Sengupta, Paul G Higgs

PLoS One· April 2019

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Bribery games on interdependent complex networks.
Prateek Verma, Anjan K Nandi, Supratim Sengupta

J Theor Biol· August 2018

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Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi.
Sumit Mukherjee, Matan Drory Retwitzer, Danny Barash, Supratim Sengupta

Sci Rep· April 2018

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Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.
Sumit Mukherjee, Danny Barash, Supratim Sengupta

PLoS One· October 2017

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Bribery games on inter-dependent regular networks.
Prateek Verma, Anjan K Nandi, Supratim Sengupta

Sci Rep· February 2017

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Deciphering a survival strategy during the interspecific competition between MSM-S1 and sp. MSM-M1.
Brinta Chakraborty, Anish Mallick, Sumana Annagiri, Supratim Sengupta, Tapas K Sengupta

R Soc Open Sci· November 2016

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Bribe and Punishment: An Evolutionary Game-Theoretic Analysis of Bribery.
Prateek Verma, Supratim Sengupta

PLoS One· May 2016

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An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding.
Matan Drory Retwitzer, Ilona Kifer, Supratim Sengupta, Zohar Yakhini, Danny Barash

PLoS One· May 2016

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Finite population analysis of the effect of horizontal gene transfer on the origin of an universal and optimal genetic code.
Neha Aggarwal, Ashutosh Vishwa Bandhu, Supratim Sengupta

Phys Biol· May 2016

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Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches in genomic sequences.
Sumit Mukherjee, Supratim Sengupta

Bioinformatics· March 2016

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Pathways of Genetic Code Evolution in Ancient and Modern Organisms.
Supratim Sengupta, Paul G Higgs

J Mol Evol· June 2015

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Two perspectives on the origin of the standard genetic code.
Supratim Sengupta, Neha Aggarwal, Ashutosh Vishwa Bandhu

Orig Life Evol Biosph· December 2014

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Revisiting the physico-chemical hypothesis of code origin: an analysis based on code-sequence coevolution in a finite population.
Ashutosh Vishwa Bandhu, Neha Aggarwal, Supratim Sengupta

Orig Life Evol Biosph· December 2013

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Phylogenetic analysis and comparative genomics of purine riboswitch distribution in prokaryotes.
Payal Singh, Supratim Sengupta

Evol Bioinform Online· November 2012

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Stuttering Min oscillations within E. coli bacteria: a stochastic polymerization model.
Supratim Sengupta, Julien Derr, Anirban Sain, Andrew D Rutenberg

Phys Biol· October 2012

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Classification of HIV-1 sequences using profile Hidden Markov Models.
Sanjiv K Dwivedi, Supratim Sengupta

PLoS One· September 2012

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Riboswitch detection using profile hidden Markov models.
Payal Singh, Pradipta Bandyopadhyay, Sudha Bhattacharya, A Krishnamachari, Supratim Sengupta

BMC Bioinformatics· October 2009

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