Publications by authors named "Swneke D Bailey"

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Aberrant EZHIP expression drives tumorigenesis in osteosarcoma.
Wajih Jawhar, Geoffroy Danieau, Alva Annett, Takeaki Ishii, Andrea Bajic, Swneke D Bailey

Nat Commun· July 2025

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Patient-derived esophageal adenocarcinoma organ chip: a physiologically relevant platform for functional precision oncology.
Sanjima Pal, Elee Shimshoni, Salvador Flores Torres, Mingyang Kong, Kulsum Tai, Swneke Donovan Bailey

J Transl Med· May 2025

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Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer.
Yueqiang Song, Fuyuan Li, Shangzi Wang, Yuntong Wang, Cong Lai, Swneke D Bailey

Genome Res· October 2024

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HiChIP-Based Epigenomic Footprinting Identifies a Promoter Variant of UXS1 That Confers Genetic Susceptibility to Gastroesophageal Cancer.
Ansley Gnanapragasam, Eftyhios Kirbizakis, Anna Li, Kyle H White, Katelyn L Mortenson, Swneke D Bailey

Cancer Res· July 2024

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3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression.
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Swneke D Bailey

Nat Commun· July 2024

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3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression.
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Swneke D Bailey

bioRxiv· June 2024

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Tumour extracellular vesicles induce neutrophil extracellular traps to promote lymph node metastasis.
Xin Su, Ariane Brassard, Alexandra Bartolomucci, Iqraa Dhoparee-Doomah, Qian Qiu, Swneke Donovan Bailey

J Extracell Vesicles· August 2023

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Soluble factors in malignant ascites promote the metastatic adhesion of gastric adenocarcinoma cells.
Luai Al-Marzouki, Vivian S Stavrakos, Sanjima Pal, Betty Giannias, France Bourdeau, Swneke D Bailey

Gastric Cancer· January 2023

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Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Liam D Hendrikse, Parthiv Haldipur, Olivier Saulnier, Jake Millman, Alexandria H Sjoboen, Swneke D Bailey

Nature· December 2022

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Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Liam D Hendrikse, Parthiv Haldipur, Olivier Saulnier, Jake Millman, Alexandria H Sjoboen, Swneke D Bailey

Nature· September 2022

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To bind or not to bind: Cistromic reprogramming in prostate cancer.
Michelle Shen, Léa-Kristine Demers, Swneke D Bailey, David P Labbé

Front Oncol· September 2022

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A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer.
Yanli Liu, Zhong Wu, Jin Zhou, Dinesh K A Ramadurai, Katelyn L Mortenson, Swneke D Bailey

Nat Commun· December 2021

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The transcriptional landscape of Shh medulloblastoma.
Patryk Skowron, Hamza Farooq, Florence M G Cavalli, A Sorana Morrissy, Michelle Ly, Swneke D Bailey

Nat Commun· March 2021

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Chromatin Looping Shapes KLF5-Dependent Transcriptional Programs in Human Epithelial Cancers.
Yanli Liu, Bingqian Guo, Estrella Aguilera-Jimenez, Vivian S Chu, Jin Zhou, Swneke D Bailey

Cancer Res· December 2020

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Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas.
Sam D Molyneux, Paul D Waterhouse, Dawne Shelton, Yang W Shao, Christopher M Watling, Swneke D Bailey

Nat Genet· April 2020

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Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma.
Hiromichi Suzuki, Sachin A Kumar, Shimin Shuai, Ander Diaz-Navarro, Ana Gutierrez-Fernandez, Swneke D Bailey

Nature· October 2019

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C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.
Tahmid Mehdi, Swneke D Bailey, Paul Guilhamon, Mathieu Lupien

Bioinformatics· March 2019

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Publisher Correction: ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters.
Swneke D Bailey, Xiaoyang Zhang, Kinjal Desai, Malika Aid, Olivia Corradin

Nat Commun· April 2018

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Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer.
Haiyang Guo, Musaddeque Ahmed, Fan Zhang, Cindy Q Yao, SiDe Li, Swneke D Bailey

Nat Genet· October 2016

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Noncoding somatic and inherited single-nucleotide variants converge to promote ESR1 expression in breast cancer.
Swneke D Bailey, Kinjal Desai, Ken J Kron, Parisa Mazrooei, Nicholas A Sinnott-Armstrong

Nat Genet· October 2016

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The Transcriptional Repressor Polycomb Group Factor 6, PCGF6, Negatively Regulates Dendritic Cell Activation and Promotes Quiescence.
Giselle M Boukhaled, Brendan Cordeiro, Genevieve Deblois, Vassil Dimitrov, Swneke D Bailey

Cell Rep· August 2016

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Pre-neoplastic epigenetic disruption of transcriptional enhancers in chronic inflammation.
Aline C Planello, Rajat Singhania, Ken J Kron, Swneke D Bailey, David Roulois

Oncotarget· March 2016

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Physical activity and genetic predisposition to obesity in a multiethnic longitudinal study.
Hudson Reddon, Hertzel C Gerstein, James C Engert, Viswanathan Mohan, Jackie Bosch, Swneke D Bailey

Sci Rep· January 2016

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ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments.
Swneke D Bailey, Carl Virtanen, Benjamin Haibe-Kains, Mathieu Lupien

Bioinformatics· September 2015

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ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters.
Swneke D Bailey, Xiaoyang Zhang, Kinjal Desai, Malika Aid, Olivia Corradin

Nat Commun· February 2015

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