Publications by authors named "TP Smith"

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Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle.
Yahui Gao, Liu Yang, Kristen Kuhn, Wenli Li, Geoffrey Zanton, Timothy P L Smith

J Adv Res· January 2026

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Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet.
Juhyun Kim, Benjamin D Rosen, Sarah E Fumagalli, Kristen L Kuhn, Amy Long, Timothy P L Smith

bioRxiv· December 2025

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KHSRP-mediated decay of axonally localized prenyl-Cdc42 mRNA slows nerve regeneration.
Matthew D Zdradzinski, Lauren S Vaughn, Samaneh Matoo, Kayleigh Trumbull, Terika P Smith

PLoS Genet· November 2025

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Immunogenomics Approaches to Studying Antibody Repertoires and Vaccine Responses in Ruminants.
Yana Safonova, Andrew Collins, Brenda M Murdoch, Benjamin D Rosen, Timothy P L Smith

Annu Rev Anim Biosci· November 2025

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Insights into natural neocentromere evolution from a cattle T2T X chromosome.
Paulene S Pineda, Callum MacPhillamy, Yan Ren, Tong Chen, Luan Zhong, Timothy P L Smith

Nat Commun· November 2025

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Provocative Mesenteric Angiography for Obscure Gastrointestinal Hemorrhage: An Update on Outcomes, Safety, and Predictors of Success.
Teresa A Benvenuti, Miriam Chisholm, Brendan Cline, David Y Johnson, Nicholas T Befera, Tony P Smith

J Vasc Interv Radiol· October 2025

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Acetylation of Axonal G3BP1 through ELP3 Accelerates Axon Regeneration.
Irene Dalla Costa, Emily Michenfelder, Sophia Siciliano, Anika Tapita, Courtney N Buchanan, Terika P Smith

bioRxiv· October 2025

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Phase variation in challenges the static genome paradigm.
Gregory P Harhay, Kelsey K McClure, Kerry D Brader, Kristen L Kuhn, Timothy P L Smith

Microbiol Spectr· September 2025

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The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression.
Xi Wang, Casia Nursyifa, Sabhrina Gita Aninta, Genís Garcia-Erill, Laura D Bertola, Timothy P L Smith

Nat Commun· September 2025

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Phylogenetic clustering of microbial communities as a biomarker for chemical pollution.
Thomas P Smith, Rachel Hope, Thomas Bell

FEMS Microbiol Ecol· April 2025

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Disruption of G3BP1 granules promotes mammalian CNS and PNS axon regeneration.
Pabitra K Sahoo, Manasi Agrawal, Nicholas Hanovice, Patricia J Ward, Meghal Desai, Terika P Smith

Proc Natl Acad Sci U S A· March 2025

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Warming alters plankton body-size distributions in a large field experiment.
Dania Albini, Emma Ransome, Alex J Dumbrell, Samraat Pawar, Eoin J O'Gorman, Thomas P Smith

Commun Biol· February 2025

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Disruption of G3BP1 Granules Promotes Mammalian CNS and PNS Axon Regeneration.
Pabitra K Sahoo, Manasi Agrawal, Nicholas Hanovice, Patricia Ward, Meghal Desai, Terika P Smith

bioRxiv· January 2025

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Eco-evolutionary robustness of wild bacterial communities to experimental perturbation.
Duhita G Sant, Thomas P Smith, Edgar L Y Wong, Juli Cohen, Kayla C King

ISME J· January 2025

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Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content.
Temitayo A Olagunju, Benjamin D Rosen, Holly L Neibergs, Gabrielle M Becker, Kimberly M Davenport, Timothy P L Smith

Nat Commun· September 2024

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The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Timothy P L Smith

Nat Genet· August 2024

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Long term impact of transjugular intrahepatic portosystemic shunt (TIPS) creation on hepatic morphology.
Vikram F Gupta, Teresa Benvenuti, James Ronald, Brendan C Cline, Nicholas T Befera, Tony P Smith

Clin Imaging· June 2024

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Differential responses of SARS-CoV-2 variants to environmental drivers during their selective sweeps.
Thomas P Smith, Swapnil Mishra, Ilaria Dorigatti, Mahika K Dixit, Michael Tristem

Sci Rep· June 2024

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High-throughput characterization of bacterial responses to complex mixtures of chemical pollutants.
Thomas P Smith, Tom Clegg, Emma Ransome, Thomas Martin-Lilley, James Rosindell

Nat Microbiol· April 2024

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Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis.
Aurélien De Jode, Rui Faria, Giulio Formenti, Ying Sims, Timothy P Smith

Genome Biol Evol· April 2024

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Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations.
Xiaodong Liu, Long Lin, Mikkel-Holger S Sinding, Laura D Bertola, Kristian Hanghøj, Timothy P L Smith

Nat Commun· April 2024

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Similar rates of reoperation for neuroma after transtibial amputations with and without targeted muscle reinnervation.
Thomas P Smith, Daniel J Cognetti, Alyssa Cook, Thomas B Lynch, Joseph F Alderete

OTA Int· March 2024

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Identification and engineering of potent cyclic peptides with selective or promiscuous binding through biochemical profiling and bioinformatic data analysis.
Thomas P Smith, Bhaskar Bhushan, Daniele Granata, Christian S Kaas, Birgitte Andersen

RSC Chem Biol· January 2024

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Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology.
Hamid Beiki, Brenda M Murdoch, Carissa A Park, Chandlar Kern, Denise Kontechy, Timothy P L Smith

Gigascience· January 2024

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Disentangling river and swamp buffalo genetic diversity: initial insights from the 1000 Buffalo Genomes Project.
Paulene S Pineda, Ester B Flores, Lilian P Villamor, Connie Joyce M Parac, Mehar S Khatkar, Timothy P L Smith

Gigascience· January 2024

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