Publications by authors named "Tanggis Bohnuud"

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Improved cytosine base editors generated from TadA variants.
Dieter K Lam, Patricia R Feliciano, Amena Arif, Tanggis Bohnuud, Thomas P Fernandez

Nat Biotechnol· May 2023

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A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing.
Xin Liu, Ye Zhang, Lucas D Ward, Qinghong Yan, Tanggis Bohnuud

Sci Rep· August 2021

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Quantifying the nativeness of antibody sequences using long short-term memory networks.
Andrew M Wollacott, Chonghua Xue, Qiuyuan Qin, June Hua, Tanggis Bohnuud

Protein Eng Des Sel· December 2019

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Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server.
Tanggis Bohnuud, George Jones, Ora Schueler-Furman, Dima Kozakov

Methods Mol Biol· February 2018

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ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.
Kathryn A Porter, Bing Xia, Dmitri Beglov, Tanggis Bohnuud, Nawsad Alam

Bioinformatics· October 2017

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New additions to the ClusPro server motivated by CAPRI.
Sandor Vajda, Christine Yueh, Dmitri Beglov, Tanggis Bohnuud, Scott E Mottarella

Proteins· March 2017

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A benchmark testing ground for integrating homology modeling and protein docking.
Tanggis Bohnuud, Lingqi Luo, Shoshana J Wodak, Alexandre M J J Bonvin, Zhiping Weng

Proteins· January 2017

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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovny, Tanggis Bohnuud

Proteins· September 2016

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Focused grid-based resampling for protein docking and mapping.
Artem B Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E Grove, Tanggis Bohnuud

J Comput Chem· April 2016

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The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.
Dima Kozakov, Laurie E Grove, David R Hall, Tanggis Bohnuud, Scott E Mottarella

Nat Protoc· May 2015

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Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces.
Tanggis Bohnuud, Dima Kozakov, Sandor Vajda

PLoS Comput Biol· October 2014

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How good is automated protein docking?
Dima Kozakov, Dmitri Beglov, Tanggis Bohnuud, Scott E Mottarella, Bing Xia

Proteins· December 2013

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Detection of peptide-binding sites on protein surfaces: the first step toward the modeling and targeting of peptide-mediated interactions.
Assaf Lavi, Chi Ho Ngan, Dana Movshovitz-Attias, Tanggis Bohnuud, Christine Yueh

Proteins· December 2013

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Application of asymmetric statistical potentials to antibody-protein docking.
Ryan Brenke, David R Hall, Gwo-Yu Chuang, Stephen R Comeau, Tanggis Bohnuud

Bioinformatics· October 2012

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Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde.
Tanggis Bohnuud, Dmitri Beglov, Chi Ho Ngan, Brandon Zerbe, David R Hall

Nucleic Acids Res· September 2012

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FTMAP: extended protein mapping with user-selected probe molecules.
Chi Ho Ngan, Tanggis Bohnuud, Scott E Mottarella, Dmitri Beglov, Elizabeth A Villar

Nucleic Acids Res· July 2012

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