Publications by authors named "Terence D Murphy"

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Database resources of the National Center for Biotechnology Information in 2026.
Eric W Sayers, Evan E Bolton, Anna M Fine, Christopher Kelly, Sunghwan Kim, Terence D Murphy

Nucleic Acids Res· December 2025

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Complete assembly and re-annotation of the zebrafish genome.
Javan Okendo, Sergey Koren, Arang Rhie, Aranza Torrado-Tapias, Brandon D Pickett, Terence D Murphy, Joy Murphy

bioRxiv· November 2025

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NCBI Orthologs: Public Resource and Scalable Method for Computing High-Precision Orthologs Across Eukaryotic Genomes.
Dong-Ha Oh, Alexander Astashyn, Barbara Robbertse, Nuala A O'leary, W Ray Anderson, Terence D Murphy

J Mol Evol· September 2025

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Database resources of the National Center for Biotechnology Information in 2025.
Eric W Sayers, Jeffrey Beck, Evan E Bolton, J Rodney Brister, Jessica Chan, Terence D Murphy

Nucleic Acids Res· January 2025

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NCBI RefSeq: reference sequence standards through 25 years of curation and annotation.
Tamara Goldfarb, Vamsi K Kodali, Shashikant Pujar, Vyacheslav Brover, Barbara Robbertse, Michael R Murphy, Terence D Murphy

Nucleic Acids Res· January 2025

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Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.
Kai Li, Melissa L Smith, J Chris Blazier, Kelli J Kochan, Jonathan M D Wood, Terence D Murphy

Genome Res· November 2024

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The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments.
Sanjida H Rangwala, Dmitry V Rudnev, Victor V Ananiev, Dong-Ha Oh, Andrea Asztalos, Terence D Murphy

PLoS Biol· May 2024

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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Terence D Murphy

Cell Genom· April 2024

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Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Alexander Astashyn, Eric S Tvedte, Deacon Sweeney, Victor Sapojnikov, Nathan Bouk, Terence D Murphy

Genome Biol· February 2024

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Database resources of the National Center for Biotechnology Information.
Eric W Sayers, Jeff Beck, Evan E Bolton, J Rodney Brister, Jessica Chan, Terence D Murphy

Nucleic Acids Res· January 2024

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The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes.
Sergei S Ryazansky, Chujia Chen, Mark Potters, Anastasia N Naumenko, Varvara Lukyanchikova, Terence D Murphy

BMC Biol· January 2024

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Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV).
Sanjida H Rangwala, Dmitry V Rudnev, Victor V Ananiev, Andrea Asztalos, Barrett Benica, Terence D Murphy

bioRxiv· November 2023

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The status of the human gene catalogue.
Paulo Amaral, Silvia Carbonell-Sala, Francisco M De La Vega, Tiago Faial, Adam Frankish, Terence D Murphy

Nature· October 2023

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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
Tristan V de Jong, Yanchao Pan, Pasi Rastas, Daniel Munro, Monika Tutaj, Terence D Murphy

bioRxiv· September 2023

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The complete sequence of a human Y chromosome.
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Terence D Murphy

Nature· September 2023

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Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Alexander Astashyn, Eric S Tvedte, Deacon Sweeney, Victor Sapojnikov, Nathan Bouk, Terence D Murphy

bioRxiv· June 2023

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The status of the human gene catalogue.
Paulo Amaral, Silvia Carbonell-Sala, Francisco M De La Vega, Tiago Faial, Adam Frankish, Terence D Murphy

ArXiv· March 2023

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The Assembled Genome of the Stroke-Prone Spontaneously Hypertensive Rat.
Theodore S Kalbfleisch, Nahla A Hussien AbouEl Ela, Kai Li, Wesley A Brashear, Kelli J Kochan, Terence D Murphy

Hypertension· January 2023

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Database resources of the National Center for Biotechnology Information in 2023.
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Terence D Murphy

Nucleic Acids Res· January 2023

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Fourth Report on Chicken Genes and Chromosomes 2022.
Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Terence D Murphy

Cytogenet Genome Res· January 2023

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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research.
Joannella Morales, Shashikant Pujar, Jane E Loveland, Alex Astashyn, Ruth Bennett, Daniel N Murphy, Michael R Murphy, Terence D Murphy

Nature· April 2022

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RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse.
Catherine M Farrell, Tamara Goldfarb, Sanjida H Rangwala, Alexander Astashyn, Olga D Ermolaeva, Terence D Murphy

Genome Res· January 2022

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Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
Pia U Olafson, Serap Aksoy, Geoffrey M Attardo, Greta Buckmeier, Xiaoting Chen, Terence D Murphy

BMC Biol· July 2021

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Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome.
Vidhya Jagannathan, Christophe Hitte, Jeffrey M Kidd, Patrick Masterson, Terence D Murphy

Genes (Basel)· May 2021

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The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
Pia U Olafson, Serap Aksoy, Geoffrey M Attardo, Greta Buckmeier, Xiaoting Chen, Terence D Murphy

BMC Biol· March 2021

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