Publications by authors named "Terrance P Shea"

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Fungal symbiont transmitted by free-living mice promotes type 2 immunity.
Yun Liao, Iris H Gao, Takato Kusakabe, Woan-Yu Lin, Alexander Grier, Terrance P Shea

Nature· December 2024

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Generating Complete Genome Assemblies of Candida auris.
Terrance P Shea, Christina A Cuomo

Methods Mol Biol· June 2022

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Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Rauf Salamzade, Abigail L Manson, Bruce J Walker, Thea Brennan-Krohn, Colin J Worby, Terrance P Shea

Genome Med· April 2022

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Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species.
Mark Voorhies, Shirli Cohen, Terrance P Shea, Semar Petrus, José F Muñoz

mBio· February 2022

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Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic.
Moira Kelly, Frank Pasmans, Jose F Muñoz, Terrance P Shea, Salvador Carranza

Nat Commun· November 2021

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Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks.
Gustavo C Cerqueira, Ashlee M Earl, Christoph M Ernst, Yonatan H Grad, John P Dekker, Terrance P Shea

Proc Natl Acad Sci U S A· January 2017

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Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.
Christopher A Desjardins, Keira A Cohen, Vanisha Munsamy, Thomas Abeel, Kashmeel Maharaj, Terrance P Shea

Nat Genet· May 2016

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Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.
Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea

PLoS Med· September 2015

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Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany.
Yonatan H Grad, Marc Lipsitch, Allison D Griggs, Brian J Haas, Terrance P Shea

Proc Natl Acad Sci U S A· December 2012

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Paired-end sequencing of Fosmid libraries by Illumina.
Louise J S Williams, Diana G Tabbaa, Na Li, Aaron M Berlin, Terrance P Shea

Genome Res· November 2012

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Finished bacterial genomes from shotgun sequence data.
Filipe J Ribeiro, Dariusz Przybylski, Shuangye Yin, Ted Sharpe, Sante Gnerre, Terrance P Shea

Genome Res· November 2012

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.
Matthew R Henn, Christian L Boutwell, Patrick Charlebois, Niall J Lennon, Karen A Power, Terrance P Shea

PLoS Pathog· July 2012

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
Sante Gnerre, Iain Maccallum, Dariusz Przybylski, Filipe J Ribeiro, Joshua N Burton, Terrance P Shea

Proc Natl Acad Sci U S A· January 2011

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ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.
Iain Maccallum, Dariusz Przybylski, Sante Gnerre, Joshua Burton, Ilya Shlyakhter, Terrance P Shea

Genome Biol· January 2010

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Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b.
Zhenping Zhong, Ron Caspi, Donald Helinski, Vic Knauf, Sean Sykes, Terrance P Shea

Plasmid· May 2003

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The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.
Jonathan A Eisen, Karen E Nelson, Ian T Paulsen, John F Heidelberg, Martin Wu, Terrance P Shea

Proc Natl Acad Sci U S A· July 2002

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