Publications by authors named "Terrance Shea"

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Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species.
Marco Teixeira, Célia Souque, Colin J Worby, Terrance Shea, Nicoletta Commins

Brief Bioinform· November 2025

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Loss of LafB activity reverses daptomycin resistance in .
Suelen Scarpa de Mello, Bailey Schultz, Byoungsook Goh, Alexandra Grote, Terrance Shea

mBio· November 2025

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Insights Into Global Antimicrobial Resistance Dynamics Through the Sequencing of Enteric Bacteria From US International Travelers.
Sushmita Sridhar, Colin J Worby, Ryan A Bronson, Sarah E Turbett, Elizabeth Oliver, Terrance Shea

J Infect Dis· September 2025

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Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species.
Marco Teixeira, Celia Souque, Colin J Worby, Terrance Shea, Nicoletta Commins

bioRxiv· August 2025

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The human milk bacteriome and mycobiome and their inter-kingdom interactions viewed across geography.
Haipeng Sun, Brett Finlay, Meghan B Azad, Christina A Cuomo, Leah E Cowen, Terrance Shea

Front Nutr· July 2025

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Insights into global antimicrobial resistance dynamics through the sequencing of enteric bacteria from U.S. international travelers.
Sushmita Sridhar, Colin J Worby, Ryan A Bronson, Sarah E Turbett, Elizabeth H Oliver, Terrance Shea

bioRxiv· January 2025

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Fungal symbiont transmitted by free-living mice promotes type 2 immunity.
Yun Liao, Iris H Gao, Takato Kusakabe, Woan-Yu Lin, Alexander Grier, Terrance P Shea

Nature· December 2024

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Improved genome assembly of strain B8441 and annotation of B11205.
Nicholas C Cauldron, Terrance Shea, Christina A Cuomo

Microbiol Resour Announc· October 2024

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Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis.
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith

PLoS Biol· June 2024

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Global diversity of enterococci and description of 18 previously unknown species.
Julia A Schwartzman, Francois Lebreton, Rauf Salamzade, Terrance Shea, Melissa J Martin

Proc Natl Acad Sci U S A· March 2024

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Comparative genomics of and reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion.
Marco A Coelho, Márcia David-Palma, Terrance Shea, Katharine Bowers, Sage McGinley-Smith

bioRxiv· January 2024

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Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen.
Terrance Shea, Jason T Mohabir, Tania Kurbessoian, Brittany Berdy, James Fontaine

Microbiol Resour Announc· July 2023

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Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque

Brief Bioinform· March 2023

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Generating Complete Genome Assemblies of Candida auris.
Terrance P Shea, Christina A Cuomo

Methods Mol Biol· June 2022

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Obligate sexual reproduction of a homothallic fungus closely related to the pathogenic species complex.
Andrew Ryan Passer, Shelly Applen Clancey, Terrance Shea, Márcia David-Palma, Anna Floyd Averette

Elife· June 2022

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Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Rauf Salamzade, Abigail L Manson, Bruce J Walker, Thea Brennan-Krohn, Colin J Worby, Terrance P Shea

Genome Med· April 2022

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Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species.
Mark Voorhies, Shirli Cohen, Terrance P Shea, Semar Petrus, José F Muñoz

mBio· February 2022

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Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic.
Moira Kelly, Frank Pasmans, Jose F Muñoz, Terrance P Shea, Salvador Carranza

Nat Commun· November 2021

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Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris.
José F Muñoz, Rory M Welsh, Terrance Shea, Dhwani Batra, Lalitha Gade

Genetics· May 2021

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Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.
Sandra Catania, Phillip A Dumesic, Harold Pimentel, Ammar Nasif, Caitlin I Stoddard, Terrance Shea

Cell· February 2020

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Complete Genome Sequences for Two Clinical Isolates from Northern and Southern Vietnam.
Christina A Cuomo, Terrance Shea, Thu Nguyen, Philip Ashton, John Perfect

Microbiol Resour Announc· January 2020

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Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.
Sandra Catania, Phillip A Dumesic, Harold Pimentel, Ammar Nasif, Caitlin I Stoddard, Terrance Shea

Cell· January 2020

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The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.
Yong Zhang, He Yang, David Turra, Shiguo Zhou, Dilay Hazal Ayhan, Terrance Shea

Commun Biol· January 2020

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A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands.
Rhys A Farrer, Miwha Chang, Michael J Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea

mBio· November 2019

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RNAi is a critical determinant of centromere evolution in closely related fungi.
Vikas Yadav, Sheng Sun, R Blake Billmyre, Bhagya C Thimmappa, Terrance Shea

Proc Natl Acad Sci U S A· March 2018

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