Publications by authors named "Timo Breit"

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Discovery of a new konkovirus species in plants reveals possible co-evolution between 5' and 3' RNA sequence motifs.
Rob J Dekker, Wim C de Leeuw, Marina F van Olst, Wim A Ensink, Selina M van Leeuwen, Timo M Breit

J Gen Virol· October 2025

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Genome sequences of 10 new carnation mottle virus variants.
Timo M Breit, Wim de Leeuw, Marina van Olst, Wim A Ensink, Selina van Leeuwen

Microbiol Resour Announc· September 2023

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Author Correction: Low energy nebulization preserves integrity of SARS-CoV-2 mRNA vaccines for respiratory delivery.
Cees J M van Rijn, Killian E Vlaming, Reinout A Bem, Rob J Dekker, Albert Poortinga, Timo Breit

Sci Rep· June 2023

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Low energy nebulization preserves integrity of SARS-CoV-2 mRNA vaccines for respiratory delivery.
Cees J M van Rijn, Killian E Vlaming, Reinout A Bem, Rob J Dekker, Albert Poortinga, Timo Breit

Sci Rep· May 2023

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Genome Sequence of a New Carnation Small Viroid-Like RNA, CarSV-1.
Timo M Breit, Wim C de Leeuw, Marina van Olst, Wim A Ensink, Selina van Leeuwen

Microbiol Resour Announc· March 2023

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miRNA repertoire and host immune factor regulation upon avian coronavirus infection in eggs.
Vera Kemp, Andrea Laconi, Giulio Cocciolo, Alinda J Berends, Timo M Breit

Arch Virol· April 2020

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Identifying small RNAs derived from maternal- and somatic-type rRNAs in zebrafish development.
Mauro D Locati, Johanna F B Pagano, Farah Abdullah, Wim A Ensink, Marina van Olst, Timo M Breit

Genome· May 2018

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Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.
Mauro D Locati, Johanna F B Pagano, Geneviève Girard, Wim A Ensink, Marina van Olst, Timo M Breit

RNA· August 2017

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Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons.
Mauro D Locati, Johanna F B Pagano, Wim A Ensink, Marina van Olst, Selina van Leeuwen, Timo M Breit

RNA· April 2017

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Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos.
Han Rauwerda, Johanna F B Pagano, Wim C de Leeuw, Wim Ensink, Ulrike Nehrdich, Timo M Breit

BMC Genomics· April 2017

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Genetic characterization of T-DNA insertions in the genome of the Arabidopsis thaliana sumo1/2 knock-down line.
Valentin Hammoudi, Georgios Vlachakis, Ronnie de Jonge, Timo M Breit, Harrold A van den Burg

Plant Signal Behav· March 2017

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Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers.
Johanna F B Pagano, Han Rauwerda, Wim C de Leeuw, Paul Wackers, Mark de Jong, Timo M Breit

Data Brief· September 2016

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Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.
Oskar Bruning, Wendy Rodenburg, Paul F K Wackers, Conny van Oostrom, Martijs J Jonker, Timo M Breit

PLoS One· July 2016

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Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs.
Han Rauwerda, Paul Wackers, Johanna F B Pagano, Mark de Jong, Wim Ensink, Timo M Breit

PLoS One· July 2016

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Valuable lessons-learned in transcriptomics experimentation.
Oskar Bruning, Han Rauwerda, Rob J Dekker, Wim C de Leeuw, Paul F K Wackers, Timo M Breit

Transcription· May 2016

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Evaluation of ribonucleic acid amplification protocols for human oocyte transcriptome analysis.
Eleni Mantikou, Oskar Bruning, Sebastiaan Mastenbroek, Sjoerd Repping, Timo Markus Breit

Fertil Steril· February 2016

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A novel toxicogenomics-based approach to categorize (non-)genotoxic carcinogens.
Mirjam M Schaap, Paul F K Wackers, Edwin P Zwart, Ilse Huijskens, Martijs J Jonker, Timo M Breit

Arch Toxicol· December 2015

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WRKY40 and WRKY6 act downstream of the green leaf volatile E-2-hexenal in Arabidopsis.
Rossana Mirabella, Han Rauwerda, Silke Allmann, Alessandra Scala, Eleni A Spyropoulou, Timo M Breit

Plant J· September 2015

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Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.
Mauro D Locati, Inez Terpstra, Wim C de Leeuw, Mateusz Kuzak, Han Rauwerda, Timo M Breit

Nucleic Acids Res· August 2015

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A day and night difference in the response of the hepatic transcriptome to cyclophosphamide treatment.
Kirsten C G Van Dycke, Romana M Nijman, Paul F K Wackers, Martijs J Jonker, Wendy Rodenburg, Timo M Breit

Arch Toxicol· February 2015

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A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure.
Oskar Bruning, Wendy Rodenburg, Conny T van Oostrom, Martijs J Jonker, Mark de Jong, Timo M Breit

PLoS One· December 2014

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Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.

Plant J· October 2014

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Staphylococcus aureus ST398 gene expression profiling during ex vivo colonization of porcine nasal epithelium.
Pawel Tulinski, Birgitta Duim, Floyd R Wittink, Martijs J Jonker, Timo M Breit

BMC Genomics· October 2014

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Absence/presence calling in microarray-based CGH experiments with non-model organisms.
Martijs J Jonker, Wim C de Leeuw, Marino Marinković, Floyd R A Wittink, Han Rauwerda, Timo M Breit

Nucleic Acids Res· June 2014

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In vivo murine hepatic microRNA and mRNA expression signatures predicting the (non-)genotoxic carcinogenic potential of chemicals.
Joost P M Melis, Kasper W J Derks, Tessa E Pronk, Paul Wackers, Mirjam M Schaap, Timo M Breit

Arch Toxicol· April 2014

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