Publications by authors named "Han Rauwerda"

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Identifying small RNAs derived from maternal- and somatic-type rRNAs in zebrafish development.
Mauro D Locati, Johanna F B Pagano, Farah Abdullah, Wim A Ensink, Marina van Olst, Han Rauwerda

Genome· May 2018

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Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.
Mauro D Locati, Johanna F B Pagano, Geneviève Girard, Wim A Ensink, Marina van Olst, Han Rauwerda

RNA· August 2017

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Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons.
Mauro D Locati, Johanna F B Pagano, Wim A Ensink, Marina van Olst, Selina van Leeuwen, Han Rauwerda

RNA· April 2017

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Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos.
Han Rauwerda, Johanna F B Pagano, Wim C de Leeuw, Wim Ensink, Ulrike Nehrdich

BMC Genomics· April 2017

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Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers.
Johanna F B Pagano, Han Rauwerda, Wim C de Leeuw, Paul Wackers, Mark de Jong

Data Brief· September 2016

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Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.
Oskar Bruning, Wendy Rodenburg, Paul F K Wackers, Conny van Oostrom, Martijs J Jonker, Han Rauwerda

PLoS One· July 2016

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Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs.
Han Rauwerda, Paul Wackers, Johanna F B Pagano, Mark de Jong, Wim Ensink

PLoS One· July 2016

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Valuable lessons-learned in transcriptomics experimentation.
Oskar Bruning, Han Rauwerda, Rob J Dekker, Wim C de Leeuw, Paul F K Wackers

Transcription· May 2016

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WRKY40 and WRKY6 act downstream of the green leaf volatile E-2-hexenal in Arabidopsis.
Rossana Mirabella, Han Rauwerda, Silke Allmann, Alessandra Scala, Eleni A Spyropoulou

Plant J· September 2015

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Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.
Mauro D Locati, Inez Terpstra, Wim C de Leeuw, Mateusz Kuzak, Han Rauwerda

Nucleic Acids Res· August 2015

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A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure.
Oskar Bruning, Wendy Rodenburg, Conny T van Oostrom, Martijs J Jonker, Mark de Jong, Han Rauwerda

PLoS One· December 2014

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Absence/presence calling in microarray-based CGH experiments with non-model organisms.
Martijs J Jonker, Wim C de Leeuw, Marino Marinković, Floyd R A Wittink, Han Rauwerda

Nucleic Acids Res· June 2014

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Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos.
Oliver W Stockhammer, Han Rauwerda, Floyd R Wittink, Timo M Breit, Annemarie H Meijer

Mol Immunol· January 2011

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Serious complications in gene-expression studies with stress perturbation: An example of UV-exposed p53-mutant mouse embryonic fibroblasts.
Oskar Bruning, Xiaolian Yuan, Wendy Rodenburg, Wendy Bruins, Conny T van Oostrom, Han Rauwerda

Transcription· November 2010

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Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example.
Han Rauwerda, Mark de Jong, Wim C de Leeuw, Herman P Spaink, Timo M Breit

BMC Res Notes· July 2010

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RNA isolation method for single embryo transcriptome analysis in zebrafish.
Mark de Jong, Han Rauwerda, Oskar Bruning, Jurgo Verkooijen, Herman P Spaink

BMC Res Notes· March 2010

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SigWinR; the SigWin-detector updated and ported to R.
Wim C de Leeuw, Han Rauwerda, Márcia A Inda, Oskar Bruning, Timo M Breit

BMC Res Notes· October 2009

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Using R in Taverna: RShell v1.2.
Ingo Wassink, Han Rauwerda, Pieter B T Neerincx, Paul E van der Vet, Timo M Breit

BMC Res Notes· July 2009

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OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity.
Pieter B T Neerincx, Han Rauwerda, Haisheng Nie, Martien A M Groenen, Timo M Breit

BMC Proc· July 2009

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Salvaging Affymetrix probes after probe-level re-annotation.
Wim C de Leeuw, Han Rauwerda, Martijs J Jonker, Timo M Breit

BMC Res Notes· August 2008

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Gene expression profiling of suppressor mechanisms in tuberculosis.
Mieneke G A Smit van Dixhoorn, Riffat Munir, Garth Sussman, Robert Stad, Muus de Haan, Han Rauwerda

Mol Immunol· March 2008

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The absence of Ser389 phosphorylation in p53 affects the basal gene expression level of many p53-dependent genes and alters the biphasic response to UV exposure in mouse embryonic fibroblasts.
Wendy Bruins, Oskar Bruning, Martijs J Jonker, Edwin Zwart, Tessa V van der Hoeven, Han Rauwerda

Mol Cell Biol· March 2008

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The Arabidopsis her1 mutant implicates GABA in E-2-hexenal responsiveness.
Rossana Mirabella, Han Rauwerda, Eduard A Struys, Cornelis Jakobs, Christian Triantaphylidès

Plant J· January 2008

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Dynamic changes of proteases and protease inhibitors revealed by microarray analysis in CA3 and entorhinal cortex during epileptogenesis in the rat.
Jan A Gorter, Erwin A Van Vliet, Han Rauwerda, Timo Breit, Robert Stad

Epilepsia· November 2007

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Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth.
Bart J F Keijser, Alex Ter Beek, Han Rauwerda, Frank Schuren, Roy Montijn

J Bacteriol· May 2007

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