Publications by authors named "Timothy D Arthur"

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Genetic analysis of elevated levels of creatinine and cystatin C biomarkers reveals novel genetic loci associated with kidney function.
Matteo D'Antonio, Timothy D Arthur, Wilfredo G Gonzalez Rivera, Ximei Wu, Jennifer P Nguyen

Hum Mol Genet· April 2025

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Multiomic QTL mapping reveals phenotypic complexity of GWAS loci and prioritizes putative causal variants.
Timothy D Arthur, Jennifer P Nguyen, Benjamin A Henson, Agnieszka D'Antonio-Chronowska, Jeffrey Jaureguy

Cell Genom· March 2025

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IFNγ activates an immune-like regulatory network in the cardiac vascular endothelium.
Timothy D Arthur, Isaac N Joshua, Jennifer P Nguyen, Agnieszka D'Antonio-Chronowska, Matteo D'Antonio

J Mol Cell Cardiol Plus· March 2025

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IFNγ activates an immune-like regulatory network in the cardiac vascular endothelium.
Timothy D Arthur, Isaac N Joshua, Jennifer P Nguyen, Agnieszka D'Antonio-Chronowska, Matteo D'Antonio

bioRxiv· January 2025

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Multi-omic QTL mapping in early developmental tissues reveals phenotypic and temporal complexity of regulatory variants underlying GWAS loci.
Timothy D Arthur, Jennifer P Nguyen, Agnieszka D'Antonio-Chronowska, Jeffrey Jaureguy, Nayara Silva

bioRxiv· April 2024

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Complex regulatory networks influence pluripotent cell state transitions in human iPSCs.
Timothy D Arthur, Jennifer P Nguyen, Agnieszka D'Antonio-Chronowska, Hiroko Matsui, Nayara S Silva

Nat Commun· February 2024

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eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk.
Jennifer P Nguyen, Timothy D Arthur, Kyohei Fujita, Bianca M Salgado, Margaret K R Donovan

Nat Commun· October 2023

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Analysis of regulatory network modules in hundreds of human stem cell lines reveals complex epigenetic and genetic factors contribute to pluripotency state differences between subpopulations.
Timothy D Arthur, Jennifer P Nguyen, Agnieszka D'Antonio-Chronowska, Hiroko Matsui, Nayara S Silva

bioRxiv· September 2023

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Author Correction: Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease.
Matteo D'Antonio, Jennifer P Nguyen, Timothy D Arthur, , Hiroko Matsui

Nat Commun· July 2023

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Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease.
Matteo D'Antonio, Jennifer P Nguyen, Timothy D Arthur, , Hiroko Matsui

Nat Commun· February 2023

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SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues.
Matteo D'Antonio, Jennifer P Nguyen, Timothy D Arthur, Hiroko Matsui,

Cell Rep· June 2022

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In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms.
Matteo D'Antonio, Jennifer P Nguyen, Timothy D Arthur, Hiroko Matsui, Margaret K R Donovan

PLoS Comput Biol· February 2022

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SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues.
Matteo D'Antonio, Jennifer P Nguyen, Timothy D Arthur, Hiroko Matsui,

Cell Rep· November 2021

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Insights into genetic factors contributing to variability in SARS-CoV-2 susceptibility and COVID-19 disease severity.
Matteo D'Antonio, , Timothy D Arthur, Jennifer P Nguyen, Hiroko Matsui

medRxiv· May 2021

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Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease.
Nadine Fornelos, Eric A Franzosa, Jason Bishai, John W Annand, Akihiko Oka, Timothy D Arthur

Nat Microbiol· March 2020

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Global chemical effects of the microbiome include new bile-acid conjugations.
Robert A Quinn, Alexey V Melnik, Alison Vrbanac, Ting Fu, Kathryn A Patras, Timothy D Arthur

Nature· March 2020

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Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Jon G Sanders, Sergey Nurk, Rodolfo A Salido, Jeremiah Minich, Zhenjiang Z Xu, Timothy D Arthur

Genome Biol· October 2019

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Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis.
Eric M Brown, Xiaobo Ke, Daniel Hitchcock, Sarah Jeanfavre, Julian Avila-Pacheco, Timothy D Arthur

Cell Host Microbe· May 2019

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Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.
Tommi Vatanen, Damian R Plichta, Juhi Somani, Philipp C Münch, Timothy D Arthur

Nat Microbiol· March 2019

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Publisher Correction: Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.
Tommi Vatanen, Damian R Plichta, Juhi Somani, Philipp C Münch, Timothy D Arthur

Nat Microbiol· March 2019

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Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut.
Xiaofang Jiang, A Brantley Hall, Timothy D Arthur, Damian R Plichta, Christian T Covington

Science· January 2019

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The human gut microbiome in early-onset type 1 diabetes from the TEDDY study.
Tommi Vatanen, Eric A Franzosa, Randall Schwager, Surya Tripathi, Timothy D Arthur

Nature· October 2018

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Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life.
Moran Yassour, Eeva Jason, Larson J Hogstrom, Timothy D Arthur, Surya Tripathi

Cell Host Microbe· July 2018

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Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.
Marta Wlodarska, Chengwei Luo, Raivo Kolde, Eva d'Hennezel, John W Annand, Timothy D Arthur

Cell Host Microbe· July 2017

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Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans.
Tommi Vatanen, Aleksandar D Kostic, Eva d'Hennezel, Heli Siljander, Eric A Franzosa, Timothy D Arthur

Cell· June 2016

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