Publications by authors named "Timothy Ebbels"

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Interlaboratory clinical chemistry parameter variation in seven-day acute hydrazine toxicity studies in the Sprague-Dawley rat.
Janonna Kadyrov, Samuele Sala, Lucy Grigoroff, Reika Masuda, Samantha Lodge, Timothy M Ebbels

Arch Toxicol· December 2025

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Taurine transport is a critical modulator of ionic fluxes during NLRP3 inflammasome activation.
Peter Rossi-Smith, Joohee Kim, Kamil Skirlo, Trevor Ferris, Jack P Green, Timothy M D Ebbels

Cell Rep· October 2025

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Simulated metabolic profiles reveal biases in pathway analysis methods.
Juliette Cooke, Cecilia Wieder, Nathalie Poupin, Clément Frainay, Timothy Ebbels

Metabolomics· September 2025

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MAMSI: Integration of Multiassay Liquid Chromatography-Mass Spectrometry Metabolomics Data Using Multiview Machine Learning.
Lukas Kopecky, Caroline J Sands, María Gómez-Romero, Shivani Misra, Elizabeth J Want, Timothy M D Ebbels

Anal Chem· July 2025

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A clinical chemical atlas of xenobiotic toxicity for the Sprague-Dawley rat.
Janonna Kadyrov, Samuele Sala, Lucy Grigoroff, Novia Minaee, Reika Masuda, Timothy M Ebbels

Arch Toxicol· June 2025

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MetAssimulo 2.0: a web app for simulating realistic 1D and 2D metabolomic 1H NMR spectra.
Yan Yan, Beatriz Jiménez, Michael T Judge, Toby Athersuch, Maria De Iorio, Timothy M D Ebbels

Bioinformatics· March 2025

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A Metabolome Wide Association Study of Fruit and Vegetable Consumption and Associations with Cardiovascular Disease Risk Factors: The International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP) Study.
Linda M Oude Griep, Elena Chekmeneva, Linda Van Horn, Queenie Chan, Martha L Daviglus, Timothy Md Ebbels

J Nutr· January 2025

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Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning.
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Timothy M D Ebbels

Anal Chem· July 2024

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LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies.
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware

Bioinformatics· March 2024

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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Timothy Ebbels

PLoS Comput Biol· March 2024

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Genome scale metabolic network modelling for metabolic profile predictions.
Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez Mier, Clément Frainay, Timothy Ebbels

PLoS Comput Biol· February 2024

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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Timothy Ebbels

bioRxiv· January 2024

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Untargeted metabolomic analysis investigating links between unprocessed red meat intake and markers of inflammation.
Alexis C Wood, Goncalo Graca, Meghana Gadgil, Mackenzie K Senn, Matthew A Allison, Timothy Ebbels

Am J Clin Nutr· November 2023

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Associations between Metabolomic Biomarkers of Avocado Intake and Glycemia in the Multi-Ethnic Study of Atherosclerosis.
Alexis C Wood, Mark O Goodarzi, Mackenzie K Senn, Meghana D Gadgil, Goncalo Graca, Timothy Ebbels

J Nutr· October 2023

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Recent advances in mass spectrometry-based computational metabolomics.
Timothy M D Ebbels, Justin J J van der Hooft, Haley Chatelaine, Corey Broeckling, Nicola Zamboni

Curr Opin Chem Biol· June 2023

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Identification of prediagnostic metabolites associated with prostate cancer risk by untargeted mass spectrometry-based metabolomics: A case-control study nested in the Northern Sweden Health and Disease Study.
Johnny R Östman, Rui C Pinto, Timothy M D Ebbels, Elin Thysell, Göran Hallmans

Int J Cancer· December 2022

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Problems, principles and progress in computational annotation of NMR metabolomics data.
Michael T Judge, Timothy M D Ebbels

Metabolomics· December 2022

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Single sample pathway analysis in metabolomics: performance evaluation and application.
Cecilia Wieder, Rachel P J Lai, Timothy M D Ebbels

BMC Bioinformatics· November 2022

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Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics.
Cecilia Wieder, Jacob G Bundy, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Timothy M D Ebbels

Environ Sci Technol· October 2022

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Blood pressure interactions with the DASH dietary pattern, sodium, and potassium: The International Study of Macro-/Micronutrients and Blood Pressure (INTERMAP).
Queenie Chan, Gina M Wren, Chung-Ho E Lau, Timothy M D Ebbels, Rachel Gibson

Am J Clin Nutr· July 2022

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Finding Correspondence between Metabolomic Features in Untargeted Liquid Chromatography-Mass Spectrometry Metabolomics Datasets.
Rui Climaco Pinto, Ibrahim Karaman, Matthew R Lewis, Jenny Hällqvist, Manuja Kaluarachchi, Timothy Ebbels

Anal Chem· April 2022

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Automated Annotation of Untargeted All-Ion Fragmentation LC-MS Metabolomics Data with MetaboAnnotatoR.
Gonçalo Graça, Yuheng Cai, Chung-Ho E Lau, Panagiotis A Vorkas, Matthew R Lewis, Timothy M D Ebbels

Anal Chem· March 2022

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Progress towards an OECD reporting framework for transcriptomics and metabolomics in regulatory toxicology.
Joshua A Harrill, Mark R Viant, Carole L Yauk, Magdalini Sachana, Timothy W Gant, Timothy M D Ebbels

Regul Toxicol Pharmacol· October 2021

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Statistical analysis in metabolic phenotyping.
Benjamin J Blaise, Gonçalo D S Correia, Gordon A Haggart, Izabella Surowiec, Caroline Sands, Timothy M D Ebbels

Nat Protoc· September 2021

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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.
Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Timothy Ebbels

PLoS Comput Biol· September 2021

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