Publications by authors named "Timothy Read"

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Methicillin-Resistant Staphylococcus aureus Bacteremia Relapses Show Diverse Genomic Profiles but Convergence in Bacteremia-Associated Genes.
Brooke M Talbot, Natasia F Jacko, Katrina S Hofstetter, Tara Alahakoon, Kevin Bouiller, Timothy D Read

J Infect Dis· December 2025

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Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections.
Sankhya Bommana, Olusola Olagoke, Yi-Juan Hu, Ruohong Wang, Mike Kama, Timothy D Read

NPJ Biofilms Microbiomes· December 2025

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Using wastewater surveillance to investigate community-level differences in antibacterial resistance in a major urban center, USA.
Cameron Goetgeluck, Oluwatosin Olojo, Stephen P Hilton, Orlando Sablon, Lorenzo Freeman, Timothy D Read

Appl Environ Microbiol· November 2025

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Staphylococcus aureus induces Gasdermin A-dependent keratinocyte pyroptosis.
Doris L LaRock, Jacob D Sherman, Claire Qu, William Ngai, Timothy D Read

Nat Commun· November 2025

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Transition of tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years.
Megan A Phillips, Robert A Petit, Daniel B Weissman, Timothy D Read

bioRxiv· September 2025

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A fluorescence-based protocol to monitor bacterial antagonism.
Justin M Luu, Cristian V Crisan, Morgan L Pettis, Anayancy Ramos Facio, Timothy D Read

Microbiol Spectr· August 2025

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Integrative analysis of microbial 16S gene and shotgun metagenomic sequencing data improves statistical efficiency in testing differential abundance.
Ye Yue, Yicong Mao, Timothy D Read, Veronika Fedirko, Glen A Satten

J Am Stat Assoc· August 2025

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Host and antibiotic jointly select for greater virulence in .
Michelle Su, Kim L Hoang, McKenna Penley, Michelle H Davis, Jennifer D Gresham, Timothy D Read

bioRxiv· April 2025

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Effect of Azithromycin treatment on the microbial composition, functional dynamics and resistomes of endocervical, vaginal and rectal microbiomes of women in Fiji with Chlamydia trachomatis infection.
Sankhya Bommana, Shola Olagoke, Yijuan Hu, Ruohong Wang, Mike Kama, Timothy Read

bioRxiv· April 2025

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Whole-genome automated assembly pipeline for strains from reference, and clinical samples using the integrated CtGAP pipeline.
Olusola Olagoke, Ammar Aziz, Lucile H Zhu, Timothy D Read, Deborah Dean

NAR Genom Bioinform· March 2025

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Comparative genomic analysis of emerging non-typeable (NTHi) causing emerging septic arthritis in Atlanta.
Brianna J Bixler, Charlotte J Royer, Robert A Petit Iii, Abraham G Moller, Samantha Sefton, Timothy D Read

PeerJ· March 2025

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Genomic investigation of MRSA bacteremia relapse reveals diverse genomic profiles but convergence in bacteremia-associated genes.
Brooke M Talbot, Natasia F Jacko, Katrina S Hofstetter, Tara Alahakoon, Kevin Bouiller, Timothy D Read

medRxiv· March 2025

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Intraspecific Diversity of Populations Isolated from Cystic Fibrosis Respiratory Infections.
Ashley M Alexander, Hui Qi Loo, Lauren Askew, Vishnu Raghuram, Timothy D Read

bioRxiv· November 2024

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Defense Heterogeneity in Host Populations Gives Rise to Pathogen Diversity.
Kim L Hoang, Timothy D Read, Kayla C King

Am Nat· October 2024

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Erratum for Balthazar et al., "A laboratory-based predictive pathway for the development of e high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase".
Jacqueline T Balthazar, Daniel Golparian, Magnus Unemo, Timothy D Read, Miriam Grosse

Microbiol Spectr· August 2024

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Metagenome-wide characterization of shared antimicrobial resistance genes in sympatric people and lemurs in rural Madagascar.
Brooke M Talbot, Julie A Clennon, Miarintsoa Fara Nantenaina Rakotoarison, Lydia Rautman, Sarah Durry, Timothy D Read

PeerJ· August 2024

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Genomic insights into the evolution of secondary metabolism of and its allies, specialized fungal symbionts of fungus-farming ants.
Aileen Berasategui, Hassan Salem, Abraham G Moller, Yuliana Christopher, Quimi Vidaurre Montoya, Timothy D Read

mSystems· July 2024

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Average nucleotide identity-based strain grouping allows identification of strain-specific genes in the pangenome.
Vishnu Raghuram, Robert A Petit, Zach Karol, Rohan Mehta, Daniel B Weissman, Timothy D Read

mSystems· July 2024

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Chlamydia suis undergoes interclade recombination promoting Tet-island exchange.
Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D Read, Hanna Marti

BMC Genomics· July 2024

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A laboratory-based predictive pathway for the development of high-level resistance to corallopyronin A, an inhibitor of bacterial RNA polymerase.
Jacqueline T Balthazar, Daniel Golparian, Magnus Unemo, Timothy D Read, Miriam Grosse

Microbiol Spectr· June 2024

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Strain Differences in Bloodstream and Skin Infection: Methicillin-Resistant Isolated in 2018-2021 in a Single Health System.
Katrina S Hofstetter, Natasia F Jacko, Margot J Shumaker, Brooke M Talbot, Robert A Petit, Timothy D Read

Open Forum Infect Dis· June 2024

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Corrigendum: Patterns of within-host spread of between vagina, endocervix and rectum revealed by comparative genomic analysis.
Sandeep J Joseph, Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D Read

Front Microbiol· June 2024

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Four-channel optically pumped magnetometer for a magnetoencephalography sensor array.
Joonas Iivanainen, Tony R Carter, Jonathan E Dhombridge, Timothy S Read, Kaleb Campbell

Opt Express· May 2024

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Factors associated with foreign body infection in methicillin-resistant bacteremia.
Kevin Bouiller, Natasia F Jacko, Margot J Shumaker, Brooke M Talbot, Timothy D Read

Front Immunol· March 2024

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The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005-2021.
Ahmed Babiker, Geeta Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Timothy D Read

Open Forum Infect Dis· March 2024

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