Publications by authors named "Tina Toni"

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Model selection in systems biology depends on experimental design.
Daniel Silk, Paul D W Kirk, Chris P Barnes, Tina Toni, Michael P H Stumpf

PLoS Comput Biol· June 2014

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A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation.
Juliane Liepe, Paul Kirk, Sarah Filippi, Tina Toni, Chris P Barnes

Nat Protoc· February 2014

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Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology.
Tina Toni, Bruce Tidor

PLoS Comput Biol· November 2013

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Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection.
Tina Toni, Yu-ichi Ozaki, Paul Kirk, Shinya Kuroda, Michael P H Stumpf

Mol Biosyst· July 2012

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Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes.
Daniel Silk, Paul D W Kirk, Chris P Barnes, Tina Toni, Anna Rose

Nat Commun· October 2011

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From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli.
Tina Toni, Goran Jovanovic, Maxime Huvet, Martin Buck, Michael P H Stumpf

BMC Syst Biol· May 2011

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Parameter inference and model selection in signaling pathway models.
Tina Toni, Michael P H Stumpf

Methods Mol Biol· December 2010

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Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology.
Nicolas Joly, Christoph Engl, Goran Jovanovic, Maxime Huvet, Tina Toni

FEMS Microbiol Rev· September 2010

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ABC-SysBio--approximate Bayesian computation in Python with GPU support.
Juliane Liepe, Chris Barnes, Erika Cule, Kamil Erguler, Paul Kirk, Tina Toni

Bioinformatics· July 2010

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Simulation-based model selection for dynamical systems in systems and population biology.
Tina Toni, Michael P H Stumpf

Bioinformatics· January 2010

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The ABC of reverse engineering biological signalling systems.
Maria Secrier, Tina Toni, Michael P H Stumpf

Mol Biosyst· December 2009

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Model-based evolutionary analysis: the natural history of phage-shock stress response.
Maxime Huvet, Tina Toni, Hui Tan, Goran Jovanovic, Christoph Engl

Biochem Soc Trans· August 2009

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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.
Tina Toni, David Welch, Natalja Strelkowa, Andreas Ipsen, Michael P H Stumpf

J R Soc Interface· February 2009

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Parameter inference for biochemical systems that undergo a Hopf bifurcation.
Paul D W Kirk, Tina Toni, Michael P H Stumpf

Biophys J· July 2008

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