Publications by authors named "Tracy Ballinger"

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Divergent trajectories to structural diversity impact patient survival in high grade serous ovarian cancer.
Ailith Ewing, Alison Meynert, Ryan Silk, Stuart Aitken, Devin P Bendixsen, Tracy Ballinger

Nat Commun· July 2025

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Modeling double strand break susceptibility to interrogate structural variation in cancer.
Tracy J Ballinger, Britta A M Bouwman, Reza Mirzazadeh, Silvano Garnerone, Nicola Crosetto

Genome Biol· February 2019

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Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair.
Eirini M Kallimasioti-Pazi, Keerthi Thelakkad Chathoth, Gillian C Taylor, Alison Meynert, Tracy Ballinger

PLoS Biol· December 2018

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Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.
Daniel R Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler

BMC Bioinformatics· September 2016

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Retrotransposition of gene transcripts leads to structural variation in mammalian genomes.
Adam D Ewing, Tracy J Ballinger, Dent Earl, , Christopher C Harris

Genome Biol· March 2013

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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
R Alan Harris, Ting Wang, Cristian Coarfa, Raman P Nagarajan, Chibo Hong, Tracy Ballinger

Nat Biotechnol· October 2010

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Conserved role of intragenic DNA methylation in regulating alternative promoters.
Alika K Maunakea, Raman P Nagarajan, Mikhail Bilenky, Tracy J Ballinger, Cletus D'Souza

Nature· July 2010

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Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks.
Daniel Zilberman, Devin Coleman-Derr, Tracy Ballinger, Steven Henikoff

Nature· November 2008

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DNA demethylation in the Arabidopsis genome.
Jon Penterman, Daniel Zilberman, Jin Hoe Huh, Tracy Ballinger, Steven Henikoff

Proc Natl Acad Sci U S A· April 2007

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Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.
Daniel Zilberman, Mary Gehring, Robert K Tran, Tracy Ballinger, Steven Henikoff

Nat Genet· January 2007

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A role for mitochondria in the establishment and maintenance of the maize root quiescent center.
Keni Jiang, Tracy Ballinger, Daisy Li, Shibo Zhang, Lewis Feldman

Plant Physiol· March 2006

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