Publications by authors named "Travers Ching"

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Multimodal, broadly neutralizing antibodies against SARS-CoV-2 identified by high-throughput native pairing of BCRs from bulk B cells.
Gladys J Keitany, Benjamin E R Rubin, Meghan E Garrett, Andrea Musa, Jeff Tracy, Travers Ching

Cell Chem Biol· November 2023

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Glycerol-assisted degradation of dibenzothiophene by Paraburkholderia sp. C3 is associated with polyhydroxyalkanoate granulation.
Camila A Ortega Ramírez, Travers Ching, Brandon Yoza, Qing X Li

Chemosphere· March 2022

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Minimal Residual Disease Dynamics after Venetoclax-Obinutuzumab Treatment: Extended Off-Treatment Follow-up From the Randomized CLL14 Study.
Othman Al-Sawaf, Can Zhang, Tong Lu, Michael Z Liao, Anesh Panchal, Travers Ching

J Clin Oncol· December 2021

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Analytical evaluation of the clonoSEQ Assay for establishing measurable (minimal) residual disease in acute lymphoblastic leukemia, chronic lymphocytic leukemia, and multiple myeloma.
Travers Ching, Megan E Duncan, Tera Newman-Eerkes, Mollie M E McWhorter, Jeffrey M Tracy

BMC Cancer· June 2020

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Maternal cardiovascular-related single nucleotide polymorphisms, genes, and pathways associated with early-onset preeclampsia.
Paula Benny, Kelly Yamasato, Breck Yunits, Xun Zhu, Travers Ching

PLoS One· March 2020

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A Novel FGFR3 Splice Variant Preferentially Expressed in African American Prostate Cancer Drives Aggressive Phenotypes and Docetaxel Resistance.
Jacqueline Olender, Bi-Dar Wang, Travers Ching, Lana X Garmire, Kaitlin Garofano

Mol Cancer Res· October 2019

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Characterization of Plant Glycoproteins: Analysis of Plant Glycopeptide Mass Spectrometry Data with plantGlycoMS, a Package in the R Statistical Computing Environment.
Margaret R Baker, Travers Ching, David L Tabb, Qing X Li

Methods Mol Biol· February 2019

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Multimodal Meta-Analysis of 1,494 Hepatocellular Carcinoma Samples Reveals Significant Impact of Consensus Driver Genes on Phenotypes.
Kumardeep Chaudhary, Olivier B Poirion, Liangqun Lu, Sijia Huang, Travers Ching

Clin Cancer Res· January 2019

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Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage.
Olivier Poirion, Xun Zhu, Travers Ching, Lana X Garmire

Nat Commun· November 2018

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Pan-cancer analysis of expressed somatic nucleotide variants in long intergenic non-coding RNA.
Travers Ching, Lana X Garmire

Pac Symp Biocomput· August 2018

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Opportunities and obstacles for deep learning in biology and medicine.
Travers Ching, Daniel S Himmelstein, Brett K Beaulieu-Jones, Alexandr A Kalinin, Brian T Do

J R Soc Interface· April 2018

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Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.
Travers Ching, Xun Zhu, Lana X Garmire

PLoS Comput Biol· April 2018

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Corrigendum: Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer.
Bi-Dar Wang, Kristin Ceniccola, SuJin Hwang, Ramez Andrawis, Anelia Horvath, Travers Ching

Nat Commun· September 2017

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Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer.
Bi-Dar Wang, Kristin Ceniccola, SuJin Hwang, Ramez Andrawis, Anelia Horvath, Travers Ching

Nat Commun· June 2017

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Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization.
Xun Zhu, Travers Ching, Xinghua Pan, Sherman M Weissman, Lana Garmire

PeerJ· January 2017

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Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer.
Nannan Feng, Travers Ching, Yu Wang, Ben Liu, Hongyan Lin

Sci Rep· November 2016

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Single-Cell Transcriptomics Bioinformatics and Computational Challenges.
Olivier B Poirion, Xun Zhu, Travers Ching, Lana Garmire

Front Genet· September 2016

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Site-Specific N-Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data.
Margaret R Baker, David L Tabb, Travers Ching, Lisa J Zimmerman, Ivan Y Sakharov

J Proteome Res· June 2016

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Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis.
Travers Ching, Karolina Peplowska, Sijia Huang, Xun Zhu, Yi Shen

EBioMedicine· May 2016

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Non-coding yet non-trivial: a review on the computational genomics of lincRNAs.
Travers Ching, Jayson Masaki, Jason Weirather, Lana X Garmire

BioData Min· December 2015

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mirMark: a site-level and UTR-level classifier for miRNA target prediction.
Mark Menor, Travers Ching, Xun Zhu, David Garmire, Lana X Garmire

Genome Biol· October 2015

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Using epigenomics data to predict gene expression in lung cancer.
Jeffery Li, Travers Ching, Sijia Huang, Lana X Garmire

BMC Bioinformatics· July 2015

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Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation.
Nicola Gagliani, Maria Carolina Amezcua Vesely, Andrea Iseppon, Leonie Brockmann, Hao Xu, Travers Ching

Nature· July 2015

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Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia.
Travers Ching, James Ha, Min-Ae Song, Maarit Tiirikainen, Janos Molnar

Clin Epigenetics· March 2015

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Power analysis and sample size estimation for RNA-Seq differential expression.
Travers Ching, Sijia Huang, Lana X Garmire

RNA· November 2014

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