Publications by authors named "Mark Menor"

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The SEQC2 epigenomics quality control (EpiQC) study.
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Mark Menor

Genome Biol· December 2021

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Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Mark Menor

Genome Biol· December 2021

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The miRNA Profile of Inflammatory Colorectal Tumors Identify TGF-β as a Companion Target for Checkpoint Blockade Immunotherapy.
Bjarne Bartlett, Zitong Gao, Monique Schukking, Mark Menor, Vedbar S Khadka

Front Cell Dev Biol· October 2021

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Bacterial Diversity Correlates with Overall Survival in Cancers of the Head and Neck, Liver, and Stomach.
Rebecca M Rodriguez, Mark Menor, Brenda Y Hernandez, Youping Deng, Vedbar S Khadka

Molecules· September 2021

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Regulation of endoplasmic reticulum stress and trophectoderm lineage specification by the mevalonate pathway in the mouse preimplantation embryo.
Yusuke Marikawa, Mark Menor, Youping Deng, Vernadeth B Alarcon

Mol Hum Reprod· March 2021

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Adaptive Thermogenesis in a Mouse Model Lacking Selenoprotein Biosynthesis in Brown Adipocytes.
Lucia A Seale, Ashley N Ogawa-Wong, Ligia M Watanabe, Vedbar S Khadka, Mark Menor

Int J Mol Sci· January 2021

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Tissue-associated microbial detection in cancer using human sequencing data.
Rebecca M Rodriguez, Vedbar S Khadka, Mark Menor, Brenda Y Hernandez, Youping Deng

BMC Bioinformatics· December 2020

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The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing.
Rebecca M Rodriguez, Brenda Y Hernandez, Mark Menor, Youping Deng, Vedbar S Khadka

Comput Struct Biotechnol J· March 2020

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Exposure-based assessment of chemical teratogenicity using morphogenetic aggregates of human embryonic stem cells.
Yusuke Marikawa, Hong-Ru Chen, Mark Menor, Youping Deng, Vernadeth B Alarcon

Reprod Toxicol· January 2020

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Combined Omics Reveals That Disruption of the Selenocysteine Lyase Gene Affects Amino Acid Pathways in Mice.
Lucia A Seale, Vedbar S Khadka, Mark Menor, Guoxiang Xie, Ligia M Watanabe

Nutrients· October 2019

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Multi-antigen Vaccination With Simultaneous Engagement of the OX40 Receptor Delays Malignant Mesothelioma Growth and Increases Survival in Animal Models.
Peter R Hoffmann, Fukun W Hoffmann, Thomas A Premeaux, Tsuyoshi Fujita, Elisa Soprana, Mark Menor

Front Oncol· August 2019

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Development of somatic mutation signatures for risk stratification and prognosis in lung and colorectal adenocarcinomas.
Mark Menor, Yong Zhu, Yu Wang, Jicai Zhang, Bin Jiang

BMC Med Genomics· January 2019

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HIF1 mediates a switch in pyruvate kinase isoforms after myocardial infarction.
Allison Lesher Williams, Vedbar Khadka, Mingxin Tang, Abigail Avelar, Kathryn J Schunke, Mark Menor

Physiol Genomics· July 2018

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mirMark: a site-level and UTR-level classifier for miRNA target prediction.
Mark Menor, Travers Ching, Xun Zhu, David Garmire, Lana X Garmire

Genome Biol· October 2015

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Prediction of mature microRNA and piwi-interacting RNA without a genome reference or precursors.
Mark S Menor, Kyungim Baek, Guylaine Poisson

Int J Mol Sci· January 2015

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Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery.
Mark Menor, Kyungim Baek, Guylaine Poisson

BMC Genomics· June 2013

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Probabilistic Prediction of Protein Phosphorylation Sites Using Classification Relevance Units Machines.
Mark Menor, Kyungim Baek, Guylaine Poisson

ACM SIGAPP Appl Comput Rev· December 2012

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