Publications by authors named "Tyler Funnell"

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Damage and Misrepair Signatures: Compact Representations of Pan-cancer Mutational Processes.
Caitlin F Harrigan, Kieran R Campbell, Quaid Morris, Tyler Funnell

bioRxiv· June 2025

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An inflammatory biomarker signature of response to CAR-T cell therapy in non-Hodgkin lymphoma.
Sandeep S Raj, Teng Fei, Shalev Fried, Andrew Ip, Joshua A Fein, Tyler Funnell

Nat Med· April 2025

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Correlating High-dimensional longitudinal microbial features with time-varying outcomes with FLORAL.
Teng Fei, Victoria Donovan, Tyler Funnell, Mirae Baichoo, Nicholas R Waters

bioRxiv· February 2025

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Scalable log-ratio lasso regression for enhanced microbial feature selection with FLORAL.
Teng Fei, Tyler Funnell, Nicholas R Waters, Sandeep S Raj, Mirae Baichoo

Cell Rep Methods· November 2024

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Sugar-rich foods exacerbate antibiotic-induced microbiome injury.
Anqi Dai, Peter A Adintori, Tyler Funnell, William P Jogia, Teng Fei

bioRxiv· October 2024

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Sexual selection may support phenotypic plasticity in male coloration of an African cichlid fish.
Peter D Dijkstra, Tyler R Funnell, Robert J Fialkowski, Taylor J Piefke, Shana E Border

Proc Biol Sci· August 2024

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Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.
Minsoo Kim, Alexander N Gorelick, Ignacio Vàzquez-García, Marc J Williams, Sohrab Salehi, Tyler Funnell

Nat Genet· May 2024

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Enhanced Feature Selection for Microbiome Data using FLORAL: Scalable Log-ratio Lasso Regression.
Teng Fei, Tyler Funnell, Nicholas R Waters, Sandeep S Raj, Keimya Sadeghi

bioRxiv· December 2023

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Pilot Trial of Homebound Hematopoietic Cell Transplantation.
Heather J Landau, Evelyn Orlando, Elizabeth S Rodriguez, Allison Applebaum, Hannah-Rose Mitchell, Tyler Funnell

Transplant Cell Ther· December 2022

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Single-cell genomic variation induced by mutational processes in cancer.
Tyler Funnell, Ciara H O'Flanagan, Marc J Williams, Andrew McPherson, Steven McKinney

Nature· December 2022

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Ovarian cancer mutational processes drive site-specific immune evasion.
Ignacio Vázquez-García, Florian Uhlitz, Nicholas Ceglia, Jamie L P Lim, Michelle Wu, Tyler Funnell

Nature· December 2022

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Accurate determination of CRISPR-mediated gene fitness in transplantable tumours.
Peter Eirew, Ciara O'Flanagan, Jerome Ting, Sohrab Salehi, Jazmine Brimhall, Tyler Funnell

Nat Commun· August 2022

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Social instability influences rank-specific patterns of oxidative stress in a cichlid fish.
Shana E Border, Taylor J Piefke, Tyler R Funnell, Robert F Fialkowski, Jacob Sawecki

J Exp Biol· October 2021

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Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.
Tyler Funnell, Allen W Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati

PLoS Comput Biol· February 2019

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Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.
Allen W Zhang, Andrew McPherson, Katy Milne, David R Kroeger, Phineas T Hamilton, Tyler Funnell

Cell· June 2018

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CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor.
Tyler Funnell, Shinya Tasaki, Arusha Oloumi, Shinsuke Araki, Esther Kong

Nat Commun· February 2017

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Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.
Jiarui Ding, Melissa K McConechy, Hugo M Horlings, Gavin Ha, Fong Chun Chan, Tyler Funnell

Nat Commun· October 2015

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