Publications by authors named "Tyler J Simmonds"

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Genome report: chromosome-scale genome assembly of the Olive fly Bactrocera oleae (Diptera: Tephritidae).
Thorsten E Hansen, Renee L Corpuz, Tyler J Simmonds, Charlotte Aldebron, Charles J Mason

G3 (Bethesda)· October 2025

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Genome Report: Improved chromosome-level genome assembly of the American cockroach, Periplaneta americana.
Rachel L Dockman, Tyler J Simmonds, Kevin J Vogel, Scott M Geib, Elizabeth A Ottesen

G3 (Bethesda)· October 2025

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Effects of species and sex on the gut microbiome of four laboratory-reared fruit fly lines (Diptera: Tephritidae) using full-length 16S rRNA PacBio Kinnex sequencing.
Sayaka Aoki, Mikinley Weaver, Tyler J Simmonds, Ikkei Shikano, Scott M Geib

BMC Microbiol· July 2025

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Assessing the impact of diet formulation and age on targeted bacterial establishment in laboratory and mass-reared Mediterranean fruit fly using full-length 16S rRNA sequencing.
Charles J Mason, Rosalie C Nelson, Mikinley Weaver, Tyler J Simmonds, Scott M Geib

Microbiol Spectr· June 2025

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Chromosome-level genome assembly and annotation of Anthurium amnicola.
Haomin Lyu, Sheina B Sim, Scott M Geib, Joanne S L Imamura, Briette L Corpuz, Tyler J Simmonds

Sci Data· April 2025

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Genome Report: Improved chromosome-level genome assembly of the American cockroach, .
Rachel L Dockman, Tyler J Simmonds, Kevin J Vogel, Scott M Geib, Elizabeth A Ottesen

bioRxiv· March 2025

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Chromosome-scale genome of the polyphagous pest Anastrepha ludens (Diptera: Tephritidae) provides insights on sex chromosome evolution in Anastrepha.
Carlos Congrains, Sheina B Sim, Daniel F Paulo, Renee L Corpuz, Angela N Kauwe, Tyler J Simmonds

G3 (Bethesda)· October 2024

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otb: an automated HiC/HiFi pipeline assembles the Prosapia bicincta Genome.
David C Molik, Amanda R Stahlke, Sharu P Sharma, Tyler J Simmonds, Renee L Corpuz

G3 (Bethesda)· August 2024

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A chromosome scale assembly of the parasitoid wasp Venturia canescens provides insight into the process of virus domestication.
Meng Mao, Tyler J Simmonds, Corinne M Stouthamer, Tara M Kehoe, Scott M Geib

G3 (Bethesda)· September 2023

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A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly.
Daniel F Paulo, Alex Y Cha, Angela N Kauwe, Keena Curbelo, Renee L Corpuz, Tyler J Simmonds

J Econ Entomol· December 2022

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HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.
Sheina B Sim, Renee L Corpuz, Tyler J Simmonds, Scott M Geib

BMC Genomics· February 2022

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The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.
Anna K Childers, Scott M Geib, Sheina B Sim, Monica F Poelchau, Brad S Coates, Tyler J Simmonds

Insects· July 2021

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Rapid Viral Symbiogenesis via Changes in Parasitoid Wasp Genome Architecture.
Gaelen R Burke, Tyler J Simmonds, Barbara J Sharanowski, Scott M Geib

Mol Biol Evol· October 2018

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Characterization of a venom gland-associated rhabdovirus in the parasitoid wasp Diachasmimorpha longicaudata.
Tyler J Simmonds, Daniel Carrillo, Gaelen R Burke

J Insect Physiol· July 2017

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Niche Conservatism for Ecological Preference in the Louisiana iris species complex.
Jennafer A P Hamlin, Tyler J Simmonds, Michael L Arnold

Biol J Linn Soc Lond· January 2017

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Microplitis demolitor Bracovirus Proviral Loci and Clustered Replication Genes Exhibit Distinct DNA Amplification Patterns during Replication.
Gaelen R Burke, Tyler J Simmonds, Sarah A Thomas, Michael R Strand

J Virol· September 2015

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