Publications by authors named "Sheina B Sim"

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CiFi: accurate long-read chromosome conformation capture with low-input requirements.
Sean P McGinty, Gulhan Kaya, Sheina B Sim, Alex Makunin, Renée L Corpuz

Nat Commun· December 2025

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Symbiont Gene Expression Predicts Insect Host's Response to High Temperatures.
Patrick T Stillson, Sheina B Sim, Renee L Corpuz, Alison Ravenscraft

Mol Ecol· November 2025

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New reference genome assembly for the declining American Bumble Bee, Bombus pensylvanicus.
Jeffrey D Lozier, Rena M Schweizer, Sheina B Sim, Jonathan Berenguer Uhuad Koch, Michael G Branstetter

G3 (Bethesda)· October 2025

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Genome report: chromosome-scale genome assembly of the Olive fly Bactrocera oleae (Diptera: Tephritidae).
Thorsten E Hansen, Renee L Corpuz, Tyler J Simmonds, Charlotte Aldebron, Charles J Mason, Sheina B Sim

G3 (Bethesda)· October 2025

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Chromosome-level genome assembly of Protandrena (Anthemurgus) passiflorae (Hymenoptera: Andrenidae), a host-plant specialist bee.
Katherine A Parys, Rena M Schweizer, Ligia R Benavides, Scott M Geib, Sheina B Sim

G3 (Bethesda)· July 2025

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Genome report: whole-genome assembly of the relapsing fever tick Ornithodoros turicata Dugès (Acari: Argasidae).
Mackenzie Tietjen, Amanda R Stahlke, David Luecke, Perot Saelao, Sheina B Sim

G3 (Bethesda)· July 2025

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Pangenomics Links Boll Weevil Divergence With Ancient Mesoamerican Cotton Cultivation.
Zachary P Cohen, Lindsey C Perkin, Tyler J Raszick, Sheina B Sim, Scott M Geib

Mol Ecol Resour· April 2025

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Chromosome-level genome assembly and annotation of Anthurium amnicola.
Haomin Lyu, Sheina B Sim, Scott M Geib, Joanne S L Imamura, Briette L Corpuz, Tyler J Simmonds

Sci Data· April 2025

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CiFi: Accurate long-read chromatin conformation capture with low-input requirements.
Sean P McGinty, Gulhan Kaya, Sheina B Sim, Renée L Corpuz, Michael A Quail

bioRxiv· February 2025

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Functional genomics implicates ebony in the black pupae phenotype of tephritid fruit flies.
Daniel F Paulo, Thu N M Nguyen, Chris M Ward, Renee L Corpuz, Angela N Kauwe, Sheina B Sim, Simon W Baxter

Commun Biol· January 2025

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Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies.
Danielle K Herrig, Ryan D Ridenbaugh, Kim L Vertacnik, Kathryn M Everson, Sheina B Sim

Syst Biol· October 2024

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Chromosome-scale genome assembly of the hunt bumble bee, Bombus huntii Greene, 1860, a species of agricultural interest.
Jonathan Berenguer Uhuad Koch, Sheina B Sim, Brian Scheffler, Jeffrey D Lozier, Scott M Geib

G3 (Bethesda)· October 2024

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Chromosome-scale genome of the polyphagous pest Anastrepha ludens (Diptera: Tephritidae) provides insights on sex chromosome evolution in Anastrepha.
Carlos Congrains, Sheina B Sim, Daniel F Paulo, Renee L Corpuz, Angela N Kauwe, Tyler J Simmonds, Sheron A Simpson

G3 (Bethesda)· October 2024

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Recurrent selection shapes the genomic landscape of differentiation between a pair of host-specialized haplodiploids that diverged with gene flow.
Ashleigh N Glover, Vitor C Sousa, Ryan D Ridenbaugh, Sheina B Sim, Scott M Geib

Mol Ecol· September 2024

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otb: an automated HiC/HiFi pipeline assembles the Prosapia bicincta Genome.
David C Molik, Amanda R Stahlke, Sharu P Sharma, Tyler J Simmonds, Renee L Corpuz, Sheina B Sim

G3 (Bethesda)· August 2024

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Reference genome for the Mojave poppy bee (Perdita meconis), a specialist pollinator of conservation concern.
Rena M Schweizer, Colleen G Meidt, Ligia R Benavides, Joseph S Wilson, Terry L Griswold, Sheina B Sim

J Hered· July 2024

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Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae).
Sheina B Sim, Carlos Congrains, Sandra M Velasco-Cuervo, Renee L Corpuz, Angela N Kauwe

G3 (Bethesda)· April 2024

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Chromosome-scale genome assembly of the rusty patched bumble bee, Bombus affinis (Cresson) (Hymenoptera: Apidae), an endangered North American pollinator.
Jonathan Berenguer Uhuad Koch, Sheina B Sim, Brian Scheffler, Scott M Geib, Tamara A Smith

G3 (Bethesda)· August 2023

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A Chromosome-Scale Genome Assembly of a Helicoverpa zea Strain Resistant to Bacillus thuringiensis Cry1Ac Insecticidal Protein.
Amanda R Stahlke, Jennifer Chang, Luke R Tembrock, Sheina B Sim, Sivanandan Chudalayandi

Genome Biol Evol· March 2023

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Insight into weevil biology from a reference quality genome of the boll weevil, Anthonomus grandis grandis Boheman (Coleoptera: Curculionidae).
Zachary P Cohen, Lindsey C Perkin, Sheina B Sim, Amanda R Stahlke, Scott M Geib

G3 (Bethesda)· February 2023

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A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly.
Daniel F Paulo, Alex Y Cha, Angela N Kauwe, Keena Curbelo, Renee L Corpuz, Tyler J Simmonds, Sheina B Sim

J Econ Entomol· December 2022

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Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees.
Qiang Huang, Sheina B Sim, Scott M Geib, Anna Childers, Junfeng Liu

Gigascience· December 2022

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Evaluating Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) Response to Methyl Eugenol: Comparison of Three Common Bioassay Methods.
Sheina B Sim, Keena M Curbelo, Nicholas C Manoukis, Dong H Cha

J Econ Entomol· April 2022

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HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.
Sheina B Sim, Renee L Corpuz, Tyler J Simmonds, Scott M Geib

BMC Genomics· February 2022

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The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.
Anna K Childers, Scott M Geib, Sheina B Sim, Monica F Poelchau, Brad S Coates, Tyler J Simmonds

Insects· July 2021

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