Publications by authors named "Tyler Reddy"

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Dynamics and lipid membrane coupling of the RAS-RAF complex revealed via multiscale simulations.
Timothy S Carpenter, Fikret Aydin, Chris Neale, Que N Van, Xiaohua Zhang, Tyler Reddy

Biophys J· August 2025

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Insertion and Anchoring of the HIV-1 Fusion Peptide into a Complex Membrane Mimicking the Human T-Cell.
Mingfei Zhao, Laura J S Lopes, Harshita Sahni, Anju Yadav, Hung N Do, Tyler Reddy

J Phys Chem B· December 2024

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Insertion and Anchoring of HIV-1 Fusion Peptide into Complex Membrane Mimicking Human T-cell.
Mingfei Zhao, Laura Joana Silva Lopes, Harshita Sahni, Anju Yadav, Hung N Do, Tyler Reddy

bioRxiv· August 2024

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Exploring CRD mobility during RAS/RAF engagement at the membrane.
Kien Nguyen, Cesar A López, Chris Neale, Que N Van, Timothy S Carpenter, Tyler Reddy

Biophys J· October 2022

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Asynchronous Reciprocal Coupling of Martini 2.2 Coarse-Grained and CHARMM36 All-Atom Simulations in an Automated Multiscale Framework.
Cesar A López, Xiaohua Zhang, Fikret Aydin, Rebika Shrestha, Que N Van, Tyler J E Reddy

J Chem Theory Comput· August 2022

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Full scale structural, mechanical and dynamical properties of HIV-1 liposomes.
Alexander J Bryer, Tyler Reddy, Edward Lyman, Juan R Perilla

PLoS Comput Biol· January 2022

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Array programming with NumPy.
Charles R Harris, K Jarrod Millman, Stéfan J van der Walt, Ralf Gommers, Pauli Virtanen, Tyler Reddy

Nature· September 2020

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Scalable Analysis of Authentic Viral Envelopes on FRONTERA.
Fabio González-Arias, Tyler Reddy, John E Stone, Jodi A Hadden-Perilla, Juan R Perilla

Comput Sci Eng· August 2020

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SciPy 1.0: fundamental algorithms for scientific computing in Python.
Pauli Virtanen, Ralf Gommers, Travis E Oliphant, Matt Haberland, Tyler Reddy

Nat Methods· March 2020

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Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python.
Pauli Virtanen, Ralf Gommers, Travis E Oliphant, Matt Haberland, Tyler Reddy

Nat Methods· March 2020

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How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins.
Matthieu Chavent, Anna L Duncan, Patrice Rassam, Oliver Birkholz, Jean Hélie, Tyler Reddy

Nat Commun· July 2018

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Protein crowding and lipid complexity influence the nanoscale dynamic organization of ion channels in cell membranes.
Anna L Duncan, Tyler Reddy, Heidi Koldsø, Jean Hélie, Philip W Fowler

Sci Rep· November 2017

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Membrane Compartmentalization Reducing the Mobility of Lipids and Proteins within a Model Plasma Membrane.
Heidi Koldsø, Tyler Reddy, Philip W Fowler, Anna L Duncan, Mark S P Sansom

J Phys Chem B· September 2016

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Computational virology: From the inside out.
Tyler Reddy, Mark S P Sansom

Biochim Biophys Acta· July 2016

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The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope.
Tyler Reddy, Mark S P Sansom

Structure· March 2016

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Methodologies for the analysis of instantaneous lipid diffusion in MD simulations of large membrane systems.
Matthieu Chavent, Tyler Reddy, Joseph Goose, Anna Caroline E Dahl, John E Stone

Faraday Discuss· June 2015

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Nothing to sneeze at: a dynamic and integrative computational model of an influenza A virion.
Tyler Reddy, David Shorthouse, Daniel L Parton, Elizabeth Jefferys, Philip W Fowler

Structure· March 2015

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Primary and secondary dimer interfaces of the fibroblast growth factor receptor 3 transmembrane domain: characterization via multiscale molecular dynamics simulations.
Tyler Reddy, Santiago Manrique, Amanda Buyan, Benjamin A Hall, Alan Chetwynd

Biochemistry· January 2014

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Structural features of the apelin receptor N-terminal tail and first transmembrane segment implicated in ligand binding and receptor trafficking.
David N Langelaan, Tyler Reddy, Aaron W Banks, Graham Dellaire, Denis J Dupré

Biochim Biophys Acta· June 2013

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Multifaceted substrate capture scheme of a rhomboid protease.
Tyler Reddy, Jan K Rainey

J Phys Chem B· August 2012

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Interpretation of biomolecular NMR spin relaxation parameters.
Tyler Reddy, Jan K Rainey

Biochem Cell Biol· April 2010

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Correlating structure, dynamics, and function in transmembrane segment VII of the Na+/H+ exchanger isoform 1.
Tyler Reddy, Xiuju Li, Larry Fliegel, Brian D Sykes, Jan K Rainey

Biochim Biophys Acta· February 2010

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Structural insight into G-protein coupled receptor binding by apelin.
David N Langelaan, E Meghan Bebbington, Tyler Reddy, Jan K Rainey

Biochemistry· January 2009

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Structural and functional characterization of transmembrane segment IX of the NHE1 isoform of the Na+/H+ exchanger.
Tyler Reddy, Jie Ding, Xiuju Li, Brian D Sykes, Jan K Rainey

J Biol Chem· August 2008

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Myf5-/- :MyoD-/- amyogenic fetuses reveal the importance of early contraction and static loading by striated muscle in mouse skeletogenesis.
Irena Rot-Nikcevic, Tyler Reddy, Kevin J Downing, Anne C Belliveau, Benedikt Hallgrímsson

Dev Genes Evol· January 2006

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