Publications by authors named "Victoria Popic"

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Graph-based deep reinforcement learning for haplotype assembly with Ralphi.
Enzo Battistella, Anant Maheshwari, Barış Ekim, Bonnie Berger, Victoria Popic

Genome Res· December 2025

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insilicoSV: a flexible grammar-based framework for structural variant simulation and placement.
Enzo Battistella, Nick Jiang, Chris Rohlicek, Ilya Shlyakhter, Victoria Popic

Bioinformatics· November 2025

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A Murine Database of Structural Variants Enables the Genetic Architecture of a Spontaneous Murine Lymphoma to be Characterized.
Wenlong Ren, Zhuoqing Fang, Egor Dolzhenko, Christopher T Saunders, Zhuanfen Cheng, Victoria Popic

bioRxiv· May 2025

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Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution.
Qian Qin, Victoria Popic, Kirsty Wienand, Houlin Yu, Emily White

Genome Res· April 2025

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ralphi: a deep reinforcement learning framework for haplotype assembly.
Enzo Battistella, Anant Maheshwari, Barış Ekim, Bonnie Berger, Victoria Popic

bioRxiv· February 2025

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Secure discovery of genetic relatives across large-scale and distributed genomic data sets.
Matthew M Hong, David Froelicher, Ricky Magner, Victoria Popic, Bonnie Berger

Genome Res· October 2024

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Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets.
Matthew M Hong, David Froelicher, Ricky Magner, Victoria Popic, Bonnie Berger

Res Comput Mol Biol· May 2024

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High-throughput RNA isoform sequencing using programmed cDNA concatenation.
Aziz M Al'Khafaji, Jonathan T Smith, Kiran V Garimella, Mehrtash Babadi, Victoria Popic

Nat Biotechnol· April 2024

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CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution.
Qian Qin, Victoria Popic, Houlin Yu, Emily White, Akanksha Khorgade

bioRxiv· February 2024

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Cue: a deep-learning framework for structural variant discovery and genotyping.
Victoria Popic, Chris Rohlicek, Fabio Cunial, Iman Hajirasouliha, Dmitry Meleshko

Nat Methods· April 2023

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Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
Camir Ricketts, Daniel Seidman, Victoria Popic, Fereydoun Hormozdiari, Serafim Batzoglou

Bioinformatics· February 2020

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Fast Metagenomic Binning via Hashing and Bayesian Clustering.
Victoria Popic, Volodymyr Kuleshov, Michael Snyder, Serafim Batzoglou

J Comput Biol· July 2018

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Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees.
Camir Ricketts, Victoria Popic, Hosein Toosi, Iman Hajirasouliha

Curr Protoc Bioinformatics· June 2018

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A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy.
Victoria Popic, Serafim Batzoglou

Nat Commun· May 2017

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Fast and scalable inference of multi-sample cancer lineages.
Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef-Haghighi, Robert B West

Genome Biol· May 2015

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Short read alignment with populations of genomes.
Lin Huang, Victoria Popic, Serafim Batzoglou

Bioinformatics· July 2013

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